Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31308
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024830-1|AAF59605.1|  256|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z77666-4|CAB01227.1|  139|Caenorhabditis elegans Hypothetical pr...    31   0.73 
CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    29   2.9  

>AC024830-1|AAF59605.1|  256|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.5 protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 560 GLPTNNSRPKLAKSVQPFSSFSETNEQQLIFILYQIKNNHNI 435
           G+PT  SR    K +  FSSF    E+ + F ++Q+ +N  I
Sbjct: 30  GIPTKRSRSGRPKKICAFSSFKCYEERDIEFFIHQVSDNQII 71


>Z77666-4|CAB01227.1|  139|Caenorhabditis elegans Hypothetical
           protein K08E7.4 protein.
          Length = 139

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 182 LTVLDTMWFSSKRRTCVSHLLKNLAARILSTTVRVCW-KQHTLRAPSVASLYLGPGGGTG 6
           LT+ D+    S++R  +S ++  L   IL   +  C  K+ T+    VA L   P GG G
Sbjct: 42  LTLQDSKPLGSEKRIMISQIILLLTLNILPFVLVHCGSKKKTVAPKPVAKLMAAPAGGVG 101


>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 548 NNSRPKLAKSVQPFSSFSETNEQQLIFILYQIKNNHNIKLIHRIILF*DL*KTGRIPT 375
           N   P + K +    +F  TN Q  + +   +KN  +I  IH+ I+  D  K  R+ T
Sbjct: 588 NQFIPNIKKKLFVLDAFPRTNNQYTLQLAKDLKNGIDINEIHKKIVQPDTYKLARLRT 645


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -2

Query: 133 SPISSRIWQRGSCQPPSACVGNSTLLERLLWPACILDPEVVL 8
           +P SSR+WQ  S  P      N T LE + W      P V L
Sbjct: 314 NPTSSRVWQYLSDTPLRVVTSNPTDLENISWTELNEQPYVNL 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,074,707
Number of Sequences: 27780
Number of extensions: 313360
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)