Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31307
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   185   7e-48
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.6  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  185 bits (450), Expect = 7e-48
 Identities = 96/217 (44%), Positives = 119/217 (54%)
 Frame = +3

Query: 3   RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 182
           R+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L GI
Sbjct: 103 RVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGI 162

Query: 183 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 362
           SS                   S  Q+PLF  A+ IT+          AG + +L +DRNL
Sbjct: 163 SSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNL 222

Query: 363 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXX 542
           NTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  F       
Sbjct: 223 NTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLW 281

Query: 543 XXXXXXXXXXXXXXHHIFTVGIDIDTRAYFTSATIII 653
                         HH+FTVG+D+DTRAYF++AT++I
Sbjct: 282 AMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVI 318



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 661 PTGIKIFR*LATIHGTQINYN 723
           PTGIKIF  LAT+ G  I ++
Sbjct: 321 PTGIKIFSWLATLTGGAIQWS 341


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 26  TPTPLPYIINFKKNCRKWCRNRMNS 100
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,893
Number of Sequences: 5004
Number of extensions: 41511
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)