Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31306
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    90   9e-20
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    82   2e-17
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    75   3e-15
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    33   0.014
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   0.93 
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    27   0.93 
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.8  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   3.8  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   3.8  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    24   6.6  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    24   6.6  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    23   8.7  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    23   8.7  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    23   8.7  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 89.8 bits (213), Expect = 9e-20
 Identities = 41/73 (56%), Positives = 56/73 (76%)
 Frame = +3

Query: 54  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 233
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 234 NIGSGVGAAPAAG 272
           NIGSG GAAP AG
Sbjct: 61  NIGSGAGAAPVAG 73


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 82.2 bits (194), Expect = 2e-17
 Identities = 40/73 (54%), Positives = 55/73 (75%)
 Frame = +3

Query: 54  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 233
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 234 NIGSGVGAAPAAG 272
           NIGS   AAPAAG
Sbjct: 61  NIGS-AAAAPAAG 72


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 74.9 bits (176), Expect = 3e-15
 Identities = 35/73 (47%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
 Frame = +3

Query: 54  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 233
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 234 NIGS-GVGAAPAA 269
           NIGS G  +AP A
Sbjct: 61  NIGSAGAASAPTA 73


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 32.7 bits (71), Expect = 0.014
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -2

Query: 283 LALHPAAGAAPTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSS 104
           ++ HP      TPEP L + S +L P ++L N    Y   ST A           T+ + 
Sbjct: 371 MSRHPMLMNPSTPEPSLGVNSPSLRPLQSLNNVQNSYRVASTQA--PPPHPLRNYTSDAE 428

Query: 103 STRMRAE*THANSA 62
           S  MR++ T A+ A
Sbjct: 429 SISMRSKSTQASDA 442


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 36  RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 206
           R+ L+ +   E     S L+L +  DV  A++ E+IS IL  +      +W      AL 
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161

Query: 207 GINVRDLIT 233
           G+N++D I+
Sbjct: 162 GLNIKDAIS 170


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 257 STHSRADVGDQVTDIDAFQG-FGEQTWPIWLYIYSRR 150
           S HSRAD   + T  D F+   G  T  I  Y+ +RR
Sbjct: 166 SIHSRADSRAETTQSDGFESRSGSPTHDIQSYLVNRR 202


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 18  GLRQLARSKLKMVSKAELACVYSAL 92
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 225 GHGH*CLPRLWRTDL 181
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 228 SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQ 121
           SGHG    P L +  +  M   L+ PL + W++  +
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKE 392


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 168 LHLQPPLSRWWKFS 127
           LH+Q  L +WWK S
Sbjct: 439 LHVQEDLCKWWKES 452


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = -2

Query: 310 PERRMQQQRLALHPAAGAAPTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEI 131
           P++ + Q      P++ ++ +    L+  S  L P + L +    YG  ++    +M   
Sbjct: 83  PDKAISQYYETSPPSSTSSLSSNNQLMNSSVILSPGQFLPDDANAYGPKASLPPSEMPSH 142

Query: 130 FSPVTATSSS 101
           F P+ + S+S
Sbjct: 143 FHPLWSKSAS 152


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 253 PTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMV 137
           PTP P  +   ++ +PSK   + P   GS S+A   + +
Sbjct: 425 PTPAPFSIAAKKSHLPSK--LSFPQDGGSLSSATTLQQL 461


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 21   LRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVD 164
            +R +A      ++++  A   +  +LV+D V + G+  STI +  A++
Sbjct: 1212 VRNMASKCFAAITESNAAGSKALHLLVEDVVPLLGDASSTIHRQGAIE 1259


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 304 RRMQQQRLALH---PAAGAAPTPEPML 233
           R+MQQ   A+     AAGA P P+P++
Sbjct: 367 RQMQQYMEAMRNMPAAAGAVPYPQPVM 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,163
Number of Sequences: 5004
Number of extensions: 24290
Number of successful extensions: 89
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)