Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31305
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 128 4e-31
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 88 8e-19
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 37 0.002
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 33 0.023
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 30 0.22
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 29 0.66
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 0.87
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 28 0.87
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.0
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 3.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.7
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 6.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.2
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 8.1
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po... 25 8.1
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 128 bits (310), Expect = 4e-31
Identities = 61/111 (54%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +3
Query: 252 PSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKAKMGFETPEEGYLAKI 431
P+H +N+PALSPTM +G+I +++KK GDK+ GD+LCEIETDKA++ FE +EGYLAKI
Sbjct: 51 PAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKI 110
Query: 432 LIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFK-DDSSPATPQKPASQDKAA 581
LI GTK VPVGK L + V ++ DVAA DF +DSS P + ++K+A
Sbjct: 111 LIETGTKDVPVGKPLAVTVENEGDVAAMADFTIEDSSAKEPSAKSGEEKSA 161
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 88.2 bits (209), Expect = 8e-19
Identities = 51/140 (36%), Positives = 82/140 (58%), Gaps = 6/140 (4%)
Frame = +3
Query: 174 LLEHAQNQTVLSTP---QWTVQMRYY--SSLPSHIKV-NLPALSPTMESGSIVSWEKKEG 335
+L+H +Q V ++ +V+ RY+ S+L + +PALSPTME G+I W KEG
Sbjct: 1 MLKHYIHQCVKASSCKHSLSVKQRYFHCSALNGVASMFRMPALSPTMEEGNITKWHFKEG 60
Query: 336 DKLSEGDLLCEIETDKAKMGFETPEEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDVAAF 515
D GD+L E+ETDKA M E + G LAK+LI G+ +PVGK + I+ ++++
Sbjct: 61 DSFKSGDILLEVETDKATMDVEVQDNGILAKVLIEKGS-NIPVGKNIAIVADAEDNLKDL 119
Query: 516 KDFKDDSSPATPQKPASQDK 575
+ KD++S +S+++
Sbjct: 120 ELPKDEASSEEQSFSSSKEE 139
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +3
Query: 264 KVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKAKMGFETPEEGYLAKILIPA 443
++ P ++ G++ W K+ G+ +++ + + +ETDK P+ G L + L+
Sbjct: 44 RIKTPPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKE 103
Query: 444 G 446
G
Sbjct: 104 G 104
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 33.5 bits (73), Expect = 0.023
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 300 SGSIVSWEKKEGDKLSEGDLLCEIETDKAKMGFETPEEGYLAKILIPAG 446
SG+IV KEG K+ +GD++ + K ++ P G L + + G
Sbjct: 1122 SGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQG 1170
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 177 LEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSE 350
L Q Q +++ P W YY +P H + L T+ S WE++ G++ ++
Sbjct: 257 LRFTQRQILMNDPYWNRGF-YYDGVPPHTGMKLAREVATISYRSGPEWEQRFGNRRAD 313
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 28.7 bits (61), Expect = 0.66
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 162 VTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSP-TMESGSIVS 317
V+NK L HAQ + S P Q + + S PS + +++P T+E+G++ S
Sbjct: 177 VSNKSLPHAQQSIIRSFPDIQKQPKGFFSYPSS---TVSSIAPSTLEAGNLHS 226
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 0.87
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 75 RNQILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLP 254
++ L D + IRS ++ LA +V + LE + + V T QW +M + +
Sbjct: 1060 KSPFLGDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTL 1119
Query: 255 SHIKVNLPALS 287
I+ N LS
Sbjct: 1120 QQIRQNRNELS 1130
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 28.3 bits (60), Expect = 0.87
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 192 NQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKE 332
N + +TP W V+ S+L + + + PAL P+ V KK+
Sbjct: 646 NSSAANTPSWGVRKARASALNARSEEDFPALPPSTSKRISVQLGKKQ 692
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +3
Query: 270 NLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKAKMGFETPEEGYLAKILIPAGT 449
N P T G +V + + G+ + G+ E+E K M E+G + I P +
Sbjct: 708 NDPTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIKQPGAS 767
Query: 450 KGVPVGKLLCIIVGD 494
+ G +L I+ D
Sbjct: 768 --LDAGDILGILTLD 780
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 336 DKLSEGD--LLCEIETDKAKMGFETPEEGYLAKILIPAGTKGV 458
D+L G L + + DK +ETP EGY +L+ A K V
Sbjct: 798 DQLQPGKVALFVDWQIDKFSFFYETPAEGY--NLLVEANEKSV 838
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 102 KKAIRSNITRCISTELAKRKVTN 170
K A+R+NI RC+ T + + N
Sbjct: 3460 KSAVRTNIERCVQTSIESKYYKN 3482
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 47 IDNVANNCVTESNLKRWS*ESYTVEH 124
I+NVANN + L WS Y V+H
Sbjct: 157 INNVANNSLKVKPLTLWSTLLYIVQH 182
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 481 LLLEIRMMLRHSKISKMTHHLQHLK 555
L + + +L+HS I K+ H+LQ+ K
Sbjct: 4454 LNVSVSDILQHSSIEKLAHYLQYEK 4478
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 84 FDSVTQLFAT-LSIFFTKTIPS 22
F+S T + +T L +FFT+T PS
Sbjct: 820 FESTTLVLSTGLDVFFTRTAPS 841
>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 8.1
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 249 LPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKAKMG 395
L SHI NLPA + E+ + + +G L L CE E KA+ G
Sbjct: 19 LASHIVENLPARYASAETWKRIYSLQHDGASLQTMYLACEKE--KARSG 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,815
Number of Sequences: 5004
Number of extensions: 54008
Number of successful extensions: 156
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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