Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31300
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 32 0.020
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 28 0.43
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 27 0.57
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 27 0.75
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 27 0.75
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 3.0
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 4.0
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 5.3
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 24 5.3
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 24 7.0
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 24 7.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 9.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 9.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 9.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 9.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 9.2
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 23 9.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 9.2
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 9.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 9.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 9.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 23 9.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 9.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 9.2
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 32.3 bits (70), Expect = 0.020
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 208 NLPRLPVPKLETTLNKYLKTVRPHLNDQ 291
NL +P+ L+T L KYLK + P +ND+
Sbjct: 62 NLLNIPMSSLQTELEKYLKPLPPAINDE 89
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 0.43
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 148 TCCHQITSNYVSAKYSTNVQNLPRLPVPKLETTLNKYLK--TVRPHLNDQEYEITK 309
T C ++S ++ K + Q+LP P P ++ N L+ P N+Q+ I K
Sbjct: 401 TTCSNLSSPHIKRKSRSPPQSLPSTPFPTSSSSTNGTLEPNANSPKKNEQDAWIAK 456
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 27.5 bits (58), Expect = 0.57
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 87 PMLRRINIMNAYKGIFIRTLYLLPSNNKQLC 179
P+++ IN++ Y+ F+R ++ L N LC
Sbjct: 487 PLVKFINLVERYQSCFVRFIHRLVVNAPDLC 517
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 27.1 bits (57), Expect = 0.75
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 127 GYLLEPYTCCHQITSNYVSAKYSTNVQ-NLPRLPVPKLETTLNKYLKTVR 273
G+ + Y C +I N+ S+ Y N+ L + K+E+T NK +K +
Sbjct: 21 GFGIHQYICT-EILENFKSSTYVVITDSNIAPLYLEKIESTFNKSIKDAK 69
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 27.1 bits (57), Expect = 0.75
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 184 AKYSTNVQNLPRLPVPKLET-TLNKYLKTVRPHLNDQEYEITKSLVKDF 327
++Y+ N+Q++ +E L + LK P LN +E+E +L +DF
Sbjct: 866 SRYNQNMQSMSDSKSVVIEDYMLMEALKKNSPSLNSEEFEHLSNLYRDF 914
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 3.0
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 184 AKYSTNVQNLPRLPVPKLETTLNKYLKTVRPH 279
A + + N P+L +P + T+N L+ + H
Sbjct: 1160 ADIAAAIWNTPKLKIPSQQVTVNNTLQQIHVH 1191
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 4.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 85 FQCCVE*I**MPTKGYLLEPYTCCH 159
F C V+ I MPT+ Y + Y CH
Sbjct: 741 FTCIVQYILLMPTRIYTEQIYALCH 765
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.2 bits (50), Expect = 5.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 78 FIIPMLRRINIMNAYKGIFIRTLYLLPSNNKQLCFCQIFYKRP 206
+ + + R+ + + G F+ L+L P N K I KRP
Sbjct: 1521 YCMEIFERLYNLQSEDGRFVNGLFLYPPNRKLYPDYYIIIKRP 1563
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 24.2 bits (50), Expect = 5.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 220 LPVPKLETTLNKYLKTVRPHLNDQEYEITKSL 315
LPV +E+++ L V PHL+ E+T L
Sbjct: 326 LPVKSVESSVQALLFMVLPHLHTLVNELTLKL 357
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 7.0
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 99 RINIMNAYKGIFIRTLYLLPSNNKQLCFCQIFYKRPKFTPSTCAKARDYIK*IFEN 266
R++ M+ Y + L++L + +K Q+ KF P TC+ +Y + E+
Sbjct: 303 RLDDMDTYSNV----LFVLENKSKLGFLAQVASSIDKFRPETCSIIGNYYSLLSEH 354
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 238 ETTLNKYLKTVRPHLNDQEYEITKSLVK 321
E TL +K +R H ND+E I L++
Sbjct: 4 ERTLIDLIKGIRSHANDEEAFIATCLLE 31
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 232 KLETTLNKYLKTVRPHLNDQEYEITKSL 315
K+E+T +LK V L + +EI+K L
Sbjct: 912 KIESTKASHLKQVSYRLESRLFEISKQL 939
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 287 SFK*GLTVFKYLFNVVSSFGT 225
SFK G+T++ ++ N V SF +
Sbjct: 1060 SFKLGITLWNWMMNQVPSFSS 1080
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 211 LPRLPVPKLETTLNKYLKTVRP 276
LP LPV ++ T ++L V+P
Sbjct: 820 LPTLPVAEIPFTYQQFLDAVKP 841
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 193 STNVQNLPRLPVPKLETTLNKYLKTVR 273
+TN +NL + V ++E + NK+L R
Sbjct: 222 TTNSRNLRKTNVSRIEYSSNKFLNHTR 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,413
Number of Sequences: 5004
Number of extensions: 25538
Number of successful extensions: 83
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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