Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31300
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...    28   1.6  
06_02_0248 + 13468100-13468336,13468426-13468569,13469044-134698...    27   2.8  
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260...    27   2.8  
01_06_1481 - 37675793-37677325                                         27   3.7  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    26   6.4  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    26   6.4  
08_01_0985 - 9960064-9960249,9960327-9960419,9960518-9960578,996...    26   6.4  
09_04_0669 + 19335661-19335917,19336153-19336279,19336393-193367...    26   8.5  

>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +1

Query: 151 CCHQITSNYVSAKYSTNVQNLPRLPVPKLETTLNKYLKTVRPHLNDQEYEITKSLVK 321
           C H +    VSA +  +  +L ++  P +     KY+  + P  N +E+ + ++L +
Sbjct: 78  CTHSLERTEVSAAFFEDPNSLNKVRCPSIYDPAEKYISLIIPAYN-EEHRLPEALTE 133


>06_02_0248 +
           13468100-13468336,13468426-13468569,13469044-13469808,
           13470272-13470564,13470642-13470833,13471151-13471229,
           13471339-13471431,13471519-13471704
          Length = 662

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 127 GYLLEPYTCCHQITSNYVSAKYSTNVQNLPRLPVPKLETTLN 252
           G +L  Y CC  +    V+ KY TN   LP+   PK E  LN
Sbjct: 577 GTVLCGYYCCEFLR---VNGKYCTNYDELPKF--PKSERELN 613


>04_04_1373 +
           33025059-33025422,33025510-33025551,33025836-33026054,
           33026145-33026384,33026483-33027508,33027770-33028545
          Length = 888

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 115 MPTKGYLLEPYTCCHQITSNYVSAKYSTNVQNLPRLPVPKLETTLNKY 258
           +P +  LLE    C+   +  + A    N++NL  L + K++ + NK+
Sbjct: 184 VPPEPVLLEVVNLCNTAMNGTLPASAFENLRNLRALNLSKMDWSFNKF 231


>01_06_1481 - 37675793-37677325
          Length = 510

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 181 SAKYSTNVQNLPRLPVPKLETTLNKYLKTVRPHLNDQEYEITKSLVK 321
           +AK S     LPR+  P   TT+  YL+ VR + N++  E  +S V+
Sbjct: 58  AAKPSVTFHKLPRIHDPPAITTIVGYLEMVRRY-NERLREFLRSGVR 103


>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 105  NIMNAYKGIFIRTLYLLPSNNKQLC 179
            NI++A+K +FI T+  +   +KQ C
Sbjct: 1433 NIISAWKNVFIPTIRSVLEGDKQFC 1457


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 105  NIMNAYKGIFIRTLYLLPSNNKQLC 179
            NI++A+K +FI T+  +   +KQ C
Sbjct: 1018 NIISAWKNVFIPTIKSVLEGDKQFC 1042


>08_01_0985 -
           9960064-9960249,9960327-9960419,9960518-9960578,
           9960667-9960774,9960921-9961106,9961427-9962421,
           9962626-9962988,9963085-9963333,9963419-9963574
          Length = 798

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 124 KGYLLEPYTCCHQITSNYVSAKYSTNVQNLPRL 222
           +G +L  Y  C  +    V+ +Y TN +NLPRL
Sbjct: 712 RGMVLCGYYACEFLR---VNGRYRTNAENLPRL 741


>09_04_0669 +
           19335661-19335917,19336153-19336279,19336393-19336771,
           19336857-19336915,19337413-19337449,19337629-19337996,
           19338493-19338543
          Length = 425

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 22  SAGTKIKGNQLKIITN 69
           SAGTK+KG QL I+ N
Sbjct: 248 SAGTKMKGGQLTILGN 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,614,002
Number of Sequences: 37544
Number of extensions: 131050
Number of successful extensions: 228
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)