Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31300
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   0.73 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   0.73 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   3.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   3.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    20   6.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   6.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.1  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 0.73
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 169 SNYVSAKYSTNVQNLPRLPVP 231
           +NY S K   N+ N+ ++PVP
Sbjct: 316 NNYNSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 0.73
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 169 SNYVSAKYSTNVQNLPRLPVP 231
           +NY S K   N+ N+ ++PVP
Sbjct: 327 NNYNSKKLYYNIINIEQIPVP 347


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 247 LNKYLKTVRPHL 282
           LN  L TVRPHL
Sbjct: 248 LNDILLTVRPHL 259


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 247 LNKYLKTVRPHL 282
           LN  L TVRPHL
Sbjct: 248 LNDILLTVRPHL 259


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 27 RDENKRKSIKNNH 65
          +D NK KS KNNH
Sbjct: 55 QDHNKEKS-KNNH 66


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 SNYVSAKYSTNVQNLPRLPVP 231
           +NY + K   N+  + ++PVP
Sbjct: 319 NNYNNKKLYYNINYIEQIPVP 339


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 275 GLTVFKYLFNVVSSFG 228
           GL +  +LF+V + FG
Sbjct: 47  GLAILLFLFSVATVFG 62


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 159 SNNKQLCFC 185
           SNNK LC C
Sbjct: 665 SNNKTLCKC 673


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 193 STNVQNLPRLPV 228
           +TN Q +PR+P+
Sbjct: 776 NTNSQAIPRIPI 787


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,984
Number of Sequences: 438
Number of extensions: 1898
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)