Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31296
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   142   2e-35
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.36 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   2.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.3  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  142 bits (345), Expect = 2e-35
 Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 1/168 (0%)
 Frame = +2

Query: 65  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEXADEGTD 241
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  QG D+ I G NPSAE A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 242 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKV 421
              E+  ++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117

Query: 422 MKDILGRFXELQFFTGESMDCDGMVAMMEYXDFDGTQIPIMMFFKHGL 565
           +K IL  F +  F+ GESMD D MV +M Y + DG   P M+FFK GL
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGL 163


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 260 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 406
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 102  ISSPVIMSL*IFILMDWRRLKII 34
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 124 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 14
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 280 VVQDYVNSALDGRVRALVSXFSRRIKTLDLDIT 182
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 536 VFAYHQSLYIPSWQPC-HHN 480
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,994
Number of Sequences: 5004
Number of extensions: 43194
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)