Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31296
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 140 5e-34
U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical pr... 33 0.19
AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical ... 29 1.7
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 3.1
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 3.1
U49954-5|AAA93427.2| 445|Caenorhabditis elegans Odorant respons... 29 3.1
U49954-4|AAN84809.1| 473|Caenorhabditis elegans Odorant respons... 29 3.1
U49954-3|AAN84808.1| 475|Caenorhabditis elegans Odorant respons... 29 3.1
AF055911-1|AAC39022.1| 445|Caenorhabditis elegans odorant respo... 29 3.1
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 3.1
U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical pr... 28 4.0
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 27 7.0
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 27 7.0
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 27 9.3
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 27 9.3
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 140 bits (340), Expect = 5e-34
Identities = 74/176 (42%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Frame = +2
Query: 65 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEXA--DEGT 238
M IYKDI T DE+ SD++ MKLVD+++YE G+ V R +G+I + G NPSAE D+G+
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGS 60
Query: 239 DSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKTNM 412
D VE G+DIVLNH+LVE + D + Y+K +MK ++ +E+ D+ V+ FK +
Sbjct: 61 DEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKI 120
Query: 413 NKVMKDILG--RFXELQFFTGESM---DCDGMVAMMEYXDFDGTQIPIMMFFKHGL 565
+ +L RF L FF GE +G VA++EY D DGT++P +M K +
Sbjct: 121 QGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAI 176
>U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical
protein EEED8.16 protein.
Length = 590
Score = 32.7 bits (71), Expect = 0.19
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +2
Query: 98 EMFSDTYKMKLVDEVIYEVTG-----RLVTRAQGDIQIEGFNPSAEXADEGTDSAVESGV 262
E+ S TY +K+ E +++ G RL+ +E S D+ +
Sbjct: 343 ELTSHTYSLKVGGERVWDYAGDNYVHRLIENGADGKLVEYQRESNASFDDKNQKGGDKLE 402
Query: 263 DIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVE 394
I L + L+ T D++ Y L+ M++ ++K+E+ A QVE
Sbjct: 403 GIKLEYTLLLTSQLEDQRKYFEGLRHDMEQTMSKMEKTAYAQVE 446
>AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical
protein F52F10.2 protein.
Length = 508
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 418 FVHVCFKYFNLVRRLLFQFCY*FFHI 341
F+++C +Y RR L FCY F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 311 KKSYTLYLKDYMKKLVAKLEEK 376
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 311 KKSYTLYLKDYMKKLVAKLEEK 376
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>U49954-5|AAA93427.2| 445|Caenorhabditis elegans Odorant response
abnormal protein4, isoform a protein.
Length = 445
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/38 (21%), Positives = 23/38 (60%)
Frame = -1
Query: 115 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQQ 2
+++ HL+ + ++LH++ +E ++ ++ K G + Q
Sbjct: 298 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGITVHQ 335
>U49954-4|AAN84809.1| 473|Caenorhabditis elegans Odorant response
abnormal protein4, isoform c protein.
Length = 473
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/38 (21%), Positives = 23/38 (60%)
Frame = -1
Query: 115 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQQ 2
+++ HL+ + ++LH++ +E ++ ++ K G + Q
Sbjct: 326 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGITVHQ 363
>U49954-3|AAN84808.1| 475|Caenorhabditis elegans Odorant response
abnormal protein4, isoform b protein.
Length = 475
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/38 (21%), Positives = 23/38 (60%)
Frame = -1
Query: 115 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQQ 2
+++ HL+ + ++LH++ +E ++ ++ K G + Q
Sbjct: 328 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGITVHQ 365
>AF055911-1|AAC39022.1| 445|Caenorhabditis elegans odorant response
protein ODR-4 protein.
Length = 445
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/38 (21%), Positives = 23/38 (60%)
Frame = -1
Query: 115 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQQ 2
+++ HL+ + ++LH++ +E ++ ++ K G + Q
Sbjct: 298 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGITVHQ 335
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 311 KKSYTLYLKDYMKKLVAKLEEK 376
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical
protein F09F9.5 protein.
Length = 219
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 370 FQFCY*FFHIVFEVQCVGFLVTEGVCF 290
+Q C+ F H+ +GF GVCF
Sbjct: 53 YQTCFGFMHVKIATCSIGFFALLGVCF 79
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 265 VNSALDGRVRALVSXFSRRIKTLDLDITLCSRHQPTGHFVNNFIDQFHFVS 113
V+ A DG+++ + + L +I LCS Q TG D F VS
Sbjct: 439 VSGAYDGKIKVWDLQAALDPRALSSEICLCSLVQHTGRVFRLQFDDFQIVS 489
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 265 VNSALDGRVRALVSXFSRRIKTLDLDITLCSRHQPTGHFVNNFIDQFHFVS 113
V+ A DG+++ + + L +I LCS Q TG D F VS
Sbjct: 439 VSGAYDGKIKVWDLQAALDPRALSSEICLCSLVQHTGRVFRLQFDDFQIVS 489
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 203 FNPSAEXADEGTDSAVESG-VDIVLNH 280
F+PSA ADE D A E G VD L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 203 FNPSAEXADEGTDSAVESG-VDIVLNH 280
F+PSA ADE D A E G VD L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,169,435
Number of Sequences: 27780
Number of extensions: 233652
Number of successful extensions: 702
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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