Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31289
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 27 0.69
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 26 1.6
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 26 1.6
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 25 2.1
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 2.1
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 25 2.1
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 2.8
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 3.7
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 24 4.8
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 24 6.4
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 24 6.4
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 23 8.5
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 27.1 bits (57), Expect = 0.69
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 137 LSKCTRAIYTSCVKFNILLVSFNFFLCLLQSIKMKNRSRQSGWWILL 277
+ + ++AI C N LLV N L ++I N ++++GW +++
Sbjct: 328 VKRLSKAIELKCA--NALLVKINQIGSLSETIDAANMAKKAGWGLMV 372
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 7 SALRRFSTHLPLRLTYFSSPRRLTHISANLLEKYFLKSVEKK 132
SAL R + +P+ LTY + + + ++ KY + +++ K
Sbjct: 151 SALSRVAKEIPILLTYMTEDPIVPSVLSSASAKYLINNLQLK 192
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 25.8 bits (54), Expect = 1.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 92 TYWKNIF*KVLKKKTLSKCTRAIYTSCVKFNILLVSFNFFLCLLQSIKMKNRSRQSG 262
TY K ++ KV K+K S + SC F V F L ++ +KN S+ +G
Sbjct: 88 TYSK-LWRKVFKRKDSSPALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASKYNG 143
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 67 RRLTHISANLLEKYFLKS 120
RR T A LLE+YFLK+
Sbjct: 38 RRTTDAEATLLEQYFLKT 55
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 49 TYFSSPRRLTHISANLLEKYFLK 117
T+F+SP L+H+ NL + LK
Sbjct: 277 TWFASPESLSHLHDNLNSYFLLK 299
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 2.1
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 137 MFFFSTLFRKYFSNRFADICVNLLGELKYVRRNGKCVENRRSA 9
M FS LF FS +A ++GE VR KC SA
Sbjct: 338 MIVFSCLFIFSFSQTWAPAAYVIVGESYPVRYRSKCAAVATSA 380
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 2.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 219 RHKKKLNETRRILNFTQLVYIARVHFD 139
R ++L E ++LN++ + I HFD
Sbjct: 700 REDRRLAEVNKLLNYSSQITIMTEHFD 726
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 173 VKFNILLVSFNFFLCLLQSIKMKNRS 250
+ ++ L VSF FF + S+ +KNR+
Sbjct: 551 IHYSFLFVSFMFFCAFVCSMFIKNRN 576
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 24.2 bits (50), Expect = 4.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 215 CLLQSIKMKNRSRQSGWWILL 277
C L+ ++ KNRSR +W+++
Sbjct: 403 CFLEFMERKNRSRYLHFWLVV 423
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 31 HLPLRLTYFSSPRRLTHISAN 93
H P L+YF+S R H++ N
Sbjct: 370 HYPDDLSYFNSSRSKAHVNKN 390
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +1
Query: 76 THISANLLEKYFLKSVEKKNIVKVYT 153
T++ +++ YF K + N+ K+YT
Sbjct: 54 TNVCVHIIHSYFPKDADYWNVDKLYT 79
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -2
Query: 95 RFADICVNLLGELKYVRRNGKCVENRRSAES 3
RF ++ + LLGE+ +RN ++++R +S
Sbjct: 1413 RFDEVGMWLLGEINERKRNESMLQSKRILDS 1443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,199,560
Number of Sequences: 5004
Number of extensions: 20107
Number of successful extensions: 70
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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