Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31289
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744...    27   4.2  
12_02_1224 + 27158810-27161366,27161593-27161969                       26   5.6  
10_08_0537 - 18625440-18626804                                         26   5.6  
04_03_0793 + 19699355-19699472,19700245-19700633,19700824-197010...    26   7.4  
02_01_0117 - 866336-866890,867484-869010                               26   7.4  
01_01_1014 - 8022787-8023935                                           26   7.4  

>12_01_0811 -
           7440413-7440712,7441285-7441398,7441448-7441705,
           7441825-7441998,7442344-7442514,7442607-7442874,
           7443171-7443937,7444437-7445123
          Length = 912

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 146 CTRAIYTSCVKFNILLVSFNFFLC 217
           CT  ++  C  F   LV F+F LC
Sbjct: 754 CTLILFNKCTLFPSELVKFSFLLC 777


>12_02_1224 + 27158810-27161366,27161593-27161969
          Length = 977

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 112 LKSVEKKNIVKVYTCY 159
           L S+  KNIVK+Y CY
Sbjct: 726 LGSIRHKNIVKLYCCY 741


>10_08_0537 - 18625440-18626804
          Length = 454

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 119 LFRKYFSNRFADICVNLLGELKYVRRNGKCVENRRSAES 3
           +FRK  S+      V     + Y+ +NGKC E R+  +S
Sbjct: 99  IFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDS 137


>04_03_0793 +
           19699355-19699472,19700245-19700633,19700824-19701065,
           19701150-19701663
          Length = 420

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 248 SRQSGWWILLVTMALIAPAA 307
           SR  GWW+L   + L A AA
Sbjct: 3   SRTVGWWLLAAAVVLAAAAA 22


>02_01_0117 - 866336-866890,867484-869010
          Length = 693

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 206 FFLCLLQSIKMKNRSRQSGWWI 271
           FFL  +    +K  ++Q GWWI
Sbjct: 572 FFLLAIAICALKEVAKQRGWWI 593


>01_01_1014 - 8022787-8023935
          Length = 382

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 233 KMKNRSRQSGWWILLVTMALIA 298
           +M+ R    GWW++LV++  +A
Sbjct: 12  EMQMREAAKGWWVILVSVPHVA 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,516,103
Number of Sequences: 37544
Number of extensions: 111436
Number of successful extensions: 264
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)