Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31287
(306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 96 9e-22
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 60 1e-10
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 57 7e-10
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 56 2e-09
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 52 3e-08
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 47 7e-07
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 42 2e-05
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 39 2e-04
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 29 0.20
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 1.9
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 2.5
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 3.3
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 24 5.8
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 23 7.7
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 96.3 bits (229), Expect = 9e-22
Identities = 50/82 (60%), Positives = 59/82 (71%)
Frame = +1
Query: 61 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 240
+SLNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 241 VTNDGAPILKSIGVDNPAAKIL 306
VTNDGA ILKSI +DN AAK+L
Sbjct: 59 VTNDGATILKSIALDNAAAKVL 80
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 59.7 bits (138), Expect = 1e-10
Identities = 29/61 (47%), Positives = 46/61 (75%)
Frame = +1
Query: 124 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKI 303
R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGA ILK + V +PAAK+
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77
Query: 304 L 306
L
Sbjct: 78 L 78
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 56.8 bits (131), Expect = 7e-10
Identities = 29/61 (47%), Positives = 41/61 (67%)
Frame = +1
Query: 124 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKI 303
R + + AI ++VKS+LGP G+DK+LV + G V VTNDGA IL + V++PA K+
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79
Query: 304 L 306
L
Sbjct: 80 L 80
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 55.6 bits (128), Expect = 2e-09
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +1
Query: 73 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 252
P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 253 GAPILKSIGVDNPAAKIL 306
GA I+K + + +PAAK L
Sbjct: 66 GATIMKLLDIVHPAAKTL 83
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 51.6 bits (118), Expect = 3e-08
Identities = 24/59 (40%), Positives = 40/59 (67%)
Frame = +1
Query: 130 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKIL 306
S + + ++V+++LGP+G+DKIL+S G++ VTNDGA IL + V++ AK+L
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLL 93
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 46.8 bits (106), Expect = 7e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Frame = +1
Query: 70 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 249
+P+ ++ +MS+ A A+ D++++ LGP+ M K+L+ G V +TN
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 250 DGAPILKSIGVDNPAAK 300
DG IL+ I V +PAAK
Sbjct: 60 DGHAILREIEVAHPAAK 76
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 41.9 bits (94), Expect = 2e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +1
Query: 145 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKIL 306
AI + D++KS LGP G K+LV +G +++T DG +L + + NP A +
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCI 75
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 38.7 bits (86), Expect = 2e-04
Identities = 18/51 (35%), Positives = 35/51 (68%)
Frame = +1
Query: 154 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKIL 306
+ ++ +++LGP G +KI+V+ + Q +TND A I++ + V +PAAK++
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLV 85
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 28.7 bits (61), Expect = 0.20
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 124 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGV 282
R S G + V TLGPKG + ++ + G ++T DG + +S+ +
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSL 93
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 225 VPPAXN*DLIHSFGT*STLYQISYGNSTD 139
V P + L+H +G T YQ YG + D
Sbjct: 308 VVPGTSVPLVHDYGASGTGYQAGYGMALD 336
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 2.5
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = +1
Query: 154 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVT 246
+G++ LGP I+ +CG ++ V+
Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSKINVS 787
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 3.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 278 PIDFNIGAPSFVTST*PEFLPXETKILSIP 189
P+D ++ +P TST PE LP E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 133 WTSEQLQLSPLLLHF*G 83
WT QL LSP +L+F G
Sbjct: 311 WTQGQLWLSPRVLYFLG 327
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 23.4 bits (48), Expect = 7.7
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -2
Query: 269 FNIGAPSFVTST*PEFLPXETKILSIPLGPKVLFTKSPMAI 147
FNI T + +TK+L P+ P F + P+ I
Sbjct: 156 FNIRTEKIEDITKRGYKDLQTKVLVTPISPLQSFLEDPLRI 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,478
Number of Sequences: 5004
Number of extensions: 21697
Number of successful extensions: 56
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -