Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31287
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 92 9e-20
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 91 2e-19
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 52 7e-08
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 52 7e-08
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 50 4e-07
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 49 8e-07
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 48 1e-06
10_08_0620 - 19321612-19323237 44 2e-05
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 42 1e-04
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 40 3e-04
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 38 0.002
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 37 0.004
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 36 0.005
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 34 0.025
03_01_0305 - 2383187-2383298,2383606-2383684,2383762-2383867,238... 33 0.033
10_08_0289 + 16534063-16534100,16534219-16534243,16534847-165349... 30 0.41
01_06_0537 + 30073020-30074471,30074957-30074980 26 6.7
10_08_0086 - 14729240-14729494,14730107-14730307 25 8.9
03_01_0281 + 2160480-2162003 25 8.9
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 91.9 bits (218), Expect = 9e-20
Identities = 47/76 (61%), Positives = 56/76 (73%)
Frame = +1
Query: 79 RILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 258
R+LK+ RM++FIGA+AI DLVK+TLGPKGMDKIL S GR V VTNDGA
Sbjct: 3 RVLKDDAVEEKGERARMAAFIGAMAIADLVKTTLGPKGMDKILQSTGRGR-SVTVTNDGA 61
Query: 259 PILKSIGVDNPAAKIL 306
ILKS+ +DNPAAK+L
Sbjct: 62 TILKSLHIDNPAAKVL 77
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 90.6 bits (215), Expect = 2e-19
Identities = 46/76 (60%), Positives = 55/76 (72%)
Frame = +1
Query: 79 RILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 258
R+LK+ RM+SF+G +AI DLVK+TLGPKGMDKIL S GR V VTNDGA
Sbjct: 4 RLLKDDATEEKGERARMASFVGGMAISDLVKTTLGPKGMDKILQSTGRGR-SVTVTNDGA 62
Query: 259 PILKSIGVDNPAAKIL 306
ILKS+ +DNPAAK+L
Sbjct: 63 TILKSLHIDNPAAKVL 78
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 52.4 bits (120), Expect = 7e-08
Identities = 25/52 (48%), Positives = 37/52 (71%)
Frame = +1
Query: 151 AIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKIL 306
A+ +++++LGPKGMDK+L S G V +TNDGA IL+ + VDN AK++
Sbjct: 39 AVARILRTSLGPKGMDKMLQS---PDGDVTITNDGATILEQMDVDNQIAKLM 87
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 52.4 bits (120), Expect = 7e-08
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 VSLN-PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQV 237
++LN P+ +LK+ ++ A A+ D++++TLGP+ M K+L+ SG +
Sbjct: 1 MALNAPVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPRSMLKMLLDA---SGGI 57
Query: 238 EVTNDGAPILKSIGVDNPAAK 300
VTNDG IL+ I + +PAAK
Sbjct: 58 VVTNDGNAILREIDIAHPAAK 78
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/60 (38%), Positives = 39/60 (65%)
Frame = +1
Query: 127 MSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKIL 306
+S+ + D V++TLGP+GMDK++ + G ++NDGA I++ + + +PAAKIL
Sbjct: 26 VSNINACTVVADTVRTTLGPRGMDKLIHD---DKGGTTISNDGATIMRLLDIIHPAAKIL 82
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 48.8 bits (111), Expect = 8e-07
Identities = 25/54 (46%), Positives = 38/54 (70%)
Frame = +1
Query: 145 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKIL 306
A A+ D V+++LGP+GMDK ++S G +V +TNDGA IL + + PAA++L
Sbjct: 35 ARAVADAVRTSLGPRGMDK-MISSGEQ--EVIITNDGATILSRMSLLQPAARML 85
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 48.0 bits (109), Expect = 1e-06
Identities = 25/76 (32%), Positives = 44/76 (57%)
Frame = +1
Query: 73 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 252
P+ +LK+ ++ A A+ D++++TLGP+ M K+L+ +G + VTND
Sbjct: 6 PVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPQSMLKMLLDA---AGGIVVTND 62
Query: 253 GAPILKSIGVDNPAAK 300
G IL+ + + +PAAK
Sbjct: 63 GNCILRELDLAHPAAK 78
>10_08_0620 - 19321612-19323237
Length = 541
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 151 AIGDLVKSTLGPKGMDKILVSCGRNSGQ-VEVTNDGAPILKSIGVDNPAAKIL 306
A+ +++LGP+GMDK++ S Q V +TNDGA IL + + PAA++L
Sbjct: 37 AVAAAARTSLGPRGMDKMISSSSSGGDQAVIITNDGATILSRMPLLQPAARML 89
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1
Query: 145 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAA 297
A + D++K+ LGPKG K+LV +G +++T DG +LK + + NP A
Sbjct: 26 AKGLQDVLKTNLGPKGTIKMLVG---GAGDIKLTKDGNTLLKEMQIQNPTA 73
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/48 (39%), Positives = 34/48 (70%)
Frame = +1
Query: 163 LVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKIL 306
+ +++LGP GM+K++++ + ++ VTND A I+ + V +PAAKIL
Sbjct: 37 ITRTSLGPNGMNKMVIN---HLDKLFVTNDAATIVNELEVQHPAAKIL 81
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 142 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKI 303
G + DLV TLGPKG + +L S G ++ NDG + K + +++P I
Sbjct: 71 GVNKLADLVGVTLGPKGRNVVLES---KYGSPKIVNDGVTVAKEVELEDPVENI 121
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1
Query: 229 GQVEVTNDGAPILKSIGVDNPAAKIL 306
G V +TNDGA IL+ + V++PAAK+L
Sbjct: 7 GDVTITNDGATILRMLEVEHPAAKVL 32
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 142 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKI 303
G + DLV TLGPKG + +L S G + NDG + + + +++P I
Sbjct: 75 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENI 125
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 33.9 bits (74), Expect = 0.025
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 142 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDNPAAKI 303
G + D VK T+GPKG + I+ R+ +VT DG + KSI ++ A +
Sbjct: 135 GVNDLADAVKVTMGPKGRNVII---ERSHRAPKVTKDGVTVAKSIEFEDSAKNV 185
>03_01_0305 -
2383187-2383298,2383606-2383684,2383762-2383867,
2383941-2384044,2384141-2384240,2384533-2384628,
2384724-2384801,2385355-2385423,2385511-2385591,
2385670-2385759,2385859-2385945,2386022-2386126,
2386591-2386686,2386796-2386971,2387225-2387384,
2387898-2388029,2388236-2388260,2389023-2389174
Length = 615
Score = 33.5 bits (73), Expect = 0.033
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 142 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAPILKSIGVDN 288
G + D VK T+GPKG ++ ++ G +VT DG + KSI N
Sbjct: 88 GVEELADAVKVTMGPKGRTVVI---EQSFGAPKVTKDGVTVAKSIEFSN 133
>10_08_0289 +
16534063-16534100,16534219-16534243,16534847-16534978,
16535255-16535441,16536014-16536189,16536282-16536377,
16536511-16536615,16536654-16536683,16536698-16536784,
16536874-16536963,16537033-16537113,16537200-16537268,
16537413-16537490,16537578-16537673,16537981-16538080,
16538208-16538311,16538396-16538501,16538595-16538673,
16538861-16538963
Length = 593
Score = 29.9 bits (64), Expect = 0.41
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +1
Query: 142 GAIAIGDLVKSTLGPKGMDKILVSCGRN------SGQVEVTNDGAPILKSI 276
G + D VK T+GPK + + GRN G +VT DG + KSI
Sbjct: 50 GVEELADAVKVTMGPKIGLNVSIMQGRNVVIEQSYGSPKVTKDGVTVAKSI 100
>01_06_0537 + 30073020-30074471,30074957-30074980
Length = 491
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 133 SFIGAIAIGDLVKSTLGPKGMDKIL 207
SF+G IGD+++S L P+ K L
Sbjct: 360 SFMGTYIIGDILRSNLNPQFWYKFL 384
>10_08_0086 - 14729240-14729494,14730107-14730307
Length = 151
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 157 GDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDG 255
GD S +G KG+ ++ C R G+V V G
Sbjct: 115 GDGSSSGVGAKGVPTLVACCHRGGGEVGVRLGG 147
>03_01_0281 + 2160480-2162003
Length = 507
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 220 SRXKLRSYPFLWDLKYSLPNLLWQ*HR-*NWTSEQLQLSPLLLHF*G 83
S+ K + P W L LP+LL HR +W + L S L F G
Sbjct: 26 SKRKNTAIPVCWPLIGMLPDLLANRHRIHDWITSLLTASQLNFRFTG 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,732,675
Number of Sequences: 37544
Number of extensions: 133736
Number of successful extensions: 316
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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