Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31284
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 122 5e-29
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 29 0.67
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 28 0.89
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 27 2.0
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.7
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 26 3.6
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 25 6.2
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 8.3
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 8.3
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 122 bits (293), Expect = 5e-29
Identities = 56/141 (39%), Positives = 83/141 (58%)
Frame = +3
Query: 168 LKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEIR 347
+++L + + +L +K ++ ++FW TQPVPK D++ PI+ ++
Sbjct: 23 IRELLDRLALRSLIEKEEAAAPPKTYEDFKFWKTQPVPKFDDECTQEGPIDPNTDINQVP 82
Query: 348 AEPYTLPDGFQWDTLNLNEPLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQPPGW 527
EPY L F+W T+++ L E++ LL ENYVED M RF Y ++FL+WAL PPG+
Sbjct: 83 REPYRLLKEFEWATIDVTNDNELSEVHELLTENYVEDATAMLRFAYISEFLRWALMPPGY 142
Query: 528 KMEWHCGVRVVKSGRLVGFIS 590
EWH GVRV S +LV FIS
Sbjct: 143 VKEWHVGVRVKSSRKLVAFIS 163
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 28.7 bits (61), Expect = 0.67
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 MEVLNLQQKPAKTTEEALHKAYQFWSTQPVP-KMDEKIIANEPIEL 323
MEVL LQ+KP + ++K + PV K K++ +E ++L
Sbjct: 588 MEVLELQKKPPYIVQNTMYKLFFGEPLNPVAVKAQRKVMPDENLDL 633
Score = 28.7 bits (61), Expect = 0.67
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 324 PKSPEEIRAEPYTLPDGFQWDTLNLNEPLV-LKELYTLLNENYVEDDDCMFRFD 482
P +P ++A+ +PD + L+LN P+ + E+ L EN ++ DD + FD
Sbjct: 613 PLNPVAVKAQRKVMPD----ENLDLNCPINGVIEVPKELLENIIQSDDSLINFD 662
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 28.3 bits (60), Expect = 0.89
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 555 HEHHNAIPFSNQVVVEPISKNQFGNQNETYNHHLPHNFH 439
H H + ++ + E IS N + ++HH HN H
Sbjct: 546 HNHDHIHKYNEKCDHESISLQNLDNDHHCHHHHENHNMH 584
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +3
Query: 393 NLNEPLVLKELY---TLLNE--NYVEDDDCMFRFDYQTD 494
N N +L+ ++ LLNE NYV+ DC+F ++TD
Sbjct: 44 NQNRNQLLRSIHIIQNLLNELDNYVDRSDCLFHSVWRTD 82
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 153 HQNISLKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWST 269
H+N + + K + +NL P K+ E +L++ Y T
Sbjct: 736 HENEKILEWKSTDDTINLPMNPHKSLEASLYEKYDLCIT 774
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 105 STANESSSSMPDPTEGHQNISLKDLKMAMEVLNLQQKPAKTTE-EALHKAYQFWSTQPVP 281
S N ++P +G+++I L +A EVL L+ ++TT E + Y + + +
Sbjct: 155 SILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIE 214
Query: 282 KMDEK 296
+ +E+
Sbjct: 215 REEEQ 219
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 244 IKHTNSGQPNRCQKWMKKLLPTSL*NYQNHRKK*GQNPILYLTDS 378
I H N+ + +R Q W +K +P + H+ K LTDS
Sbjct: 58 IVHLNNLKEDRFQLWFEKYIPQKAADLAVHKSKISAIKQWMLTDS 102
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 513 VEPISKNQFGNQNETYNHHLPHNFH*VKCTVLSILKV 403
V PI KN Q++T LP N+ V + LKV
Sbjct: 326 VSPIYKNPVAEQSDTPTRSLPKNYAYVAKSTSPELKV 362
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 120 SSSSMPDPTEGHQNISLKDLKMAMEVLNLQQKPAK 224
S +S+P G + L+ + EVL+LQ+ P K
Sbjct: 68 SKASIPTNINGLSQVKPSALEKSQEVLSLQKLPIK 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,783
Number of Sequences: 5004
Number of extensions: 53059
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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