Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31283
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    30   0.34 
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    27   1.8  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   5.5  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   5.5  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   7.3  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   7.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.6  

>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 496 NVVFKFVIFAPASSKVLLGKLATAPASSSTLTWNPFFTNL 377
           NVVF+ +IF P   +V+LGK+ +       +T + FF ++
Sbjct: 69  NVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS-FFDDI 107


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 406 LTWNPFFTNLLTTAGT 359
           +TW+P + NLLTT G+
Sbjct: 298 VTWHPLYPNLLTTGGS 313


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -3

Query: 553 TFCISLSRSGRTFKTISDWNVVFKFVIFAPASSKVLLGKLATAPASSSTLTWNPFFTNLL 374
           +F I  +R      T +D  V    V+ APA   +         ASS+T + N      +
Sbjct: 330 SFTIEQNRENEKSSTKNDSTVSSSAVVMAPAGPAMAPSASNKPSASSTTKSSNSKSKKKV 389

Query: 373 TTAGTTSF 350
           T+   TSF
Sbjct: 390 TSISGTSF 397


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 506 IRLECSF*VCN--FRSSLFKSLIGKISYSTCIFFN 408
           + L C   VC   FR++      GK+S S C F+N
Sbjct: 30  VTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYN 64


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 480 NLKTTFQSDIVLKVRPL-LDNEIQNVRNEGTLISFLYPAQNQDLIKKLSERKMNAFAMD 653
           N++   + D  L+++PL  D +I+ +       SF+    N D +++L E+K+N+F  D
Sbjct: 316 NVEKRTEIDEYLQIQPLPTDEDIKKIPLIEDDTSFMNV--NPDELEELLEKKLNSFCDD 372


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 513 LKVRPLLDNEIQNVRNEGTLISFLYPAQNQDLIKKLSER 629
           +KV+PLL NE+Q  +   T+   L       L+   SE+
Sbjct: 47  IKVQPLLANEVQTFKALITIHRVLQEGHKSALVDSQSEK 85


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 572 DIFPLSCSKSRFNKKAF*KKDE 637
           D+FP   SK +F  K F KKD+
Sbjct: 10  DLFPTEISKVKFFTKDFSKKDK 31


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 174 YLNNCSPVGAFTARSSKYLSFN 109
           YL+NC  +G  T   S YLS N
Sbjct: 301 YLSNCKKLGISTLPPSNYLSPN 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,537
Number of Sequences: 5004
Number of extensions: 48672
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)