Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31283
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0271 + 2243496-2243500,2245011-2245061,2245174-2245322,224...    29   2.5  
12_01_0300 - 2272679-2272793,2272814-2272932                           28   5.7  
09_01_0047 + 826083-826139,828207-828380,828529-828657,829512-82...    27   9.9  
07_03_0456 - 18382373-18382582,18382785-18383231                       27   9.9  

>01_01_0271 +
           2243496-2243500,2245011-2245061,2245174-2245322,
           2245870-2245970,2246327-2246385,2246763-2246809,
           2246952-2247030,2247139-2247211,2247294-2247413,
           2247685-2247744,2247881-2247994,2248921-2249016,
           2249094-2249333
          Length = 397

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/80 (30%), Positives = 40/80 (50%)
 Frame = +3

Query: 351 KEVVPAVVSKLVKKGFHVNVEEDAGAVANFPNKTFEEAGAKITNLKTTFQSDIVLKVRPL 530
           KE V  V ++L+     V + + +G  +++P       G ++ +L   +QS  VLK R  
Sbjct: 228 KEEVWEVGAQLLGLSIGVFIMDTSGIKSSYPTLALTWLGVRLLHLWFRYQSLSVLKFR-T 286

Query: 531 LDNEIQNVRNEGTLISFLYP 590
           +D  ++  RNE   I FL P
Sbjct: 287 VDRLLKLYRNE-KYILFLNP 305


>12_01_0300 - 2272679-2272793,2272814-2272932
          Length = 77

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 393 GFHVNVEEDAGAVANFPNKTFEEAGAKITNLKTTFQSDIVLKVR 524
           G  + +  D  A+++     FEE G  + + ++  Q+D+ + VR
Sbjct: 34  GMAIPLRRDESAISDLAGHRFEEEGYPVVDYESDLQTDMSITVR 77


>09_01_0047 +
           826083-826139,828207-828380,828529-828657,829512-829688,
           829747-829845
          Length = 211

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 165 NCSPVGAFTARSSKYLSFNYKHNSNLARSLS 73
           NC P+ +    SS+Y   NYK  ++L ++L+
Sbjct: 26  NCDPLCSVDEVSSQYFEANYKPKNDLLKALT 56


>07_03_0456 - 18382373-18382582,18382785-18383231
          Length = 218

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 183 TFPKCADPQECFVHINNYQDHGNADCQVALQLRL 284
           +FP  + P+  ++ I+ Y   G+ DC   LQLRL
Sbjct: 26  SFPSRSSPK--YLKISQYSSTGDGDCLRLLQLRL 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,730,943
Number of Sequences: 37544
Number of extensions: 268502
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)