Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31282
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.8  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   4.8  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   4.8  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    24   6.3  

>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 143 DDLFAWLVGWSMPTLVVRIVVAPLDVVLIMMD 48
           DD+F    GW+ P  +  IV A  D  LI ++
Sbjct: 224 DDIFFGGTGWAEPPKIADIVDAAGDTDLISLE 255


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 104 TLVVRIVVAPLDVVLIMMDGSQCFCGGVRSN 12
           T +V I+ A +  +++  DG    C GVR N
Sbjct: 181 TGLVSILCAKMGSIVLATDGDTKVCDGVREN 211


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 111 NANSSCSNRGCAAR 70
           N N+ CSN+GCA +
Sbjct: 73  NDNAMCSNQGCAVK 86


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 122 VGWSMPTLVVRIVVAPLDVVLIMM-DGS 42
           +GWS+P+ +   V AP    ++M+ DGS
Sbjct: 421 IGWSVPSAMGYAVAAPERRTIVMVGDGS 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 934,636
Number of Sequences: 5004
Number of extensions: 12765
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)