Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31282
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708     29   0.85 
10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839     27   4.5  
07_01_0843 - 6851354-6851518,6851654-6852448                           26   7.9  
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460...    26   7.9  

>10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708
          Length = 567

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 164 NTVLMREDDLFAWLVGWSMPTLVVRIVVA 78
           NTVL+   D   W VG+++PTL + + +A
Sbjct: 172 NTVLVYLQDNVGWTVGYALPTLGLAVSIA 200


>10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839
          Length = 626

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 161 TVLMREDDLFAWLVGWSMPTLVVRIVVA 78
           TVL+   D  +W VG+ +PTL + + VA
Sbjct: 227 TVLVYLQDNVSWTVGYGIPTLGLMVSVA 254


>07_01_0843 - 6851354-6851518,6851654-6852448
          Length = 319

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   KLIRSDAAAETLRTIHHNQDNIERRNHDS 92
           K+  +D   +TL T H N  NI+R+ H +
Sbjct: 142 KITDADMIDKTLSTFHANHVNIQRQYHQA 170


>06_03_0124 -
           16942492-16945032,16945478-16945572,16945966-16946076,
           16946142-16946229
          Length = 944

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 162 YSFNARRRFICLVGWLVNANSSCS 91
           +  N+R    CLVGW    NS CS
Sbjct: 3   FLLNSRLSSSCLVGWSGTLNSLCS 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,918,642
Number of Sequences: 37544
Number of extensions: 83280
Number of successful extensions: 251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)