Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31282
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    30   0.57 
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    30   0.57 
U58763-1|AAK68877.2|  559|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    26   7.0  
U55364-13|AAM29677.1|  250|Caenorhabditis elegans Hypothetical p...    26   9.3  
U55364-12|AAA97977.2|  260|Caenorhabditis elegans Hypothetical p...    26   9.3  

>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 42  RTIHHNQDNIERRNHDSN 95
           R+ HHNQD   R+NHD N
Sbjct: 102 RSRHHNQDRNRRQNHDRN 119



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 51  HHNQDNIERRNHDSN 95
           +HNQD    RNHD N
Sbjct: 81  NHNQDRNRHRNHDGN 95


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 42  RTIHHNQDNIERRNHDSN 95
           R+ HHNQD   R+NHD N
Sbjct: 946 RSRHHNQDRNRRQNHDRN 963



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 51  HHNQDNIERRNHDSN 95
           +HNQD    RNHD N
Sbjct: 925 NHNQDRNRHRNHDGN 939


>U58763-1|AAK68877.2|  559|Caenorhabditis elegans Hypothetical
           protein F10C5.2 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 17  IGRRRRNTENHPS*SGQHRAAQPRFEQL 100
           IG RR +T  H +   +HR   PR EQ+
Sbjct: 472 IGFRRDSTPRHGNFQSEHRPRMPRTEQI 499


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 178 VSFEIIQF*CEKTIYLLGWLVGQCQL 101
           V  EI+   CEK++Y L   +G+C L
Sbjct: 92  VRTEIVLLPCEKSLYQLDLHIGKCSL 117


>U55364-13|AAM29677.1|  250|Caenorhabditis elegans Hypothetical
           protein F21C10.3b protein.
          Length = 250

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = -2

Query: 99  SCSNRG--CAARCCPDYDGWFSV 37
           SCS R   C   CC D++ WF +
Sbjct: 179 SCSGRVDCCGMYCCHDFNQWFEL 201


>U55364-12|AAA97977.2|  260|Caenorhabditis elegans Hypothetical
           protein F21C10.3a protein.
          Length = 260

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = -2

Query: 99  SCSNRG--CAARCCPDYDGWFSV 37
           SCS R   C   CC D++ WF +
Sbjct: 179 SCSGRVDCCGMYCCHDFNQWFEL 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,218,292
Number of Sequences: 27780
Number of extensions: 75855
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)