Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31281
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   9.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 240 PRLLRTSLSVPCRPSHPDGGAFRRSRGIRREEHHXLRNRPCTYRSHC 100
           PR++    +V CR S P G A   +   R E+        C Y +HC
Sbjct: 704 PRIMDLD-NVMCRTSGPRGVAIVSASTARSEQF------LCRYEAHC 743


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 373 PCFSLRLPSTPRP 411
           PCF   LPS P P
Sbjct: 469 PCFEEPLPSLPLP 481


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 129 NRPCTYRSHCLLPTRQLPR 73
           N   TY + CLL  ++ PR
Sbjct: 478 NMAATYMNECLLNIQKSPR 496


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 194 CDGRHGTERLVRRRRGTEQKRY 259
           CDG+ G    ++  +GTE  +Y
Sbjct: 493 CDGKPGLCDAMKPTKGTELLKY 514


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 251 FALCLVSYVRV 219
           F LC+VSY+ V
Sbjct: 9   FTLCIVSYMMV 19


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 316 RRFGIIPSTMSSVSPPRNIPC 378
           R   +IP T   V   + IPC
Sbjct: 529 RSTDVIPGTQEHVCGVKGIPC 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,001
Number of Sequences: 438
Number of extensions: 3035
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)