Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31280
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676           29   2.2  
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262...    29   2.2  
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76...    28   2.9  
02_02_0737 - 13529180-13529543,13530661-13531178                       28   3.8  
08_01_0756 - 7161089-7161452,7161589-7161995                           27   8.8  
06_01_1183 + 10157813-10159909                                         27   8.8  
03_06_0395 + 33616304-33616494,33616863-33617095,33617213-336173...    27   8.8  
03_02_0098 + 5608787-5610812,5610956-5611053                           27   8.8  
01_05_0220 - 19434011-19434802                                         27   8.8  

>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
          Length = 1098

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 79  LTNNKEEAHRIVTGKLYAVGS-ATPPSERRLSVPATTIQSR 198
           LT+NKE +  IVT +  AVGS    P  + L  P + +  R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461


>02_01_0365 +
           2621302-2621711,2622442-2622620,2623381-2623496,
           2623626-2623964,2624113-2624307,2624505-2624594,
           2625288-2625518,2625632-2625952
          Length = 626

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 248 CEDSWAPGQ-FLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLLF 84
           C +S  P   FLP+   GRLC   +  +K L      L T++    T++C SS +F
Sbjct: 187 CHESVNPEHVFLPTTRHGRLCKHCSSKMKILDAINAHLGTSF----TVKCPSSDIF 238


>09_01_0042 +
           764349-764763,764853-764902,765096-765172,766179-766236,
           767481-767607,768665-768769,768842-769424,769470-769775,
           770048-770139,770391-770440
          Length = 620

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 363 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 277
           E+ P SGS F+FLTE T  S     PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382


>02_02_0737 - 13529180-13529543,13530661-13531178
          Length = 293

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 209 YAGGRLCMVVAGTLKRL--SLGGVALPTAYSLPVTIRCAS 96
           +AGG   +  AGTL+RL   LGG    TA++L  T+R +S
Sbjct: 186 HAGG-FVLHPAGTLRRLRHGLGGFTTLTAWALRRTLRASS 224


>08_01_0756 - 7161089-7161452,7161589-7161995
          Length = 256

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 376 LRTGYRTNRIWPLPLHAVGSM 438
           LRTG R  R WP+ L   G +
Sbjct: 236 LRTGQRGTRAWPMTLRTAGGV 256


>06_01_1183 + 10157813-10159909
          Length = 698

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -3

Query: 225 SVSTILCGRAALYGGRGDTQTSLTGGSG---ATNSV*LAGDDPMCFFLVVCERS-ATSGG 58
           S  ++LC RA  +GG G +  S         A  +    G D + FF+     +   +GG
Sbjct: 74  SAGSVLCSRAVAFGGGGGSAASFAARFSFVIAEQNAGSTGGDGIAFFISPDHATLGATGG 133

Query: 57  Y 55
           Y
Sbjct: 134 Y 134


>03_06_0395 +
           33616304-33616494,33616863-33617095,33617213-33617303,
           33617882-33617930,33618123-33618214,33618285-33618398,
           33618473-33619172,33619269-33619336,33619626-33619760,
           33619862-33620079,33620169-33620593
          Length = 771

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 146 VALPTAYSLPVTIRCASSLLFVSVPPLQVAMNGAG 42
           + LP   +LPVT++     LF   P + VA  G G
Sbjct: 634 IRLPKGATLPVTLKVLEFELFHVCPVMTVAPGGGG 668


>03_02_0098 + 5608787-5610812,5610956-5611053
          Length = 707

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = -1

Query: 248 CEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLL 87
           CED  A         GGR C  V G + R ++     P   SL   IRC S LL
Sbjct: 75  CEDDDAGAGAGAGVDGGRSCGEVVGAVWRAAMAAPDDPELPSLG-AIRCMSLLL 127


>01_05_0220 - 19434011-19434802
          Length = 263

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 248 CEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLP 117
           C    AP +  PSY      + V  + +RL  GGVA+P   + P
Sbjct: 19  CHVGKAPLEVGPSYVRFLCALTVKYSTRRLGGGGVAVPLQPAAP 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,439
Number of Sequences: 37544
Number of extensions: 349207
Number of successful extensions: 1018
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)