Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31279
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0596 + 22608835-22610263,22610411-22610531,22610765-226118...    27   4.5  
04_04_0132 + 22998941-22999073,22999218-22999347,23000257-230009...    27   4.5  
04_03_0913 + 20777859-20780309                                         27   5.9  

>06_03_0596 +
           22608835-22610263,22610411-22610531,22610765-22611864,
           22611969-22612327
          Length = 1002

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 48  FKQFVVIYSVSASFAKKNTLTNKLSNPLLYFSIKFTLNLNSNSKE 182
           F++ V I+++  S   +N LT K+ + L  FS+ + LNL+ N+ E
Sbjct: 550 FEKLVGIWNMDIS---QNNLTGKIPDFLSNFSLLYDLNLSFNNFE 591


>04_04_0132 +
           22998941-22999073,22999218-22999347,23000257-23000950,
           23001545-23001580,23003165-23003446
          Length = 424

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 402 DGLFLRTNKDTNYTSSVLYIHVLSLSLL 319
           DG F  T ++ NY +S+L + V ++SLL
Sbjct: 300 DGEFQETEEEKNYWNSILNLGVTAVSLL 327


>04_03_0913 + 20777859-20780309
          Length = 816

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 80  GHGVYHNELFEIHNDQCQ*N 21
           G  ++HNEL  I  DQC  N
Sbjct: 400 GCSIWHNELLNIRKDQCSEN 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,301,941
Number of Sequences: 37544
Number of extensions: 129602
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)