Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31279
(413 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical ... 29 1.3
Z68316-2|CAA92681.1| 352|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical pr... 28 2.3
AC084158-9|AAK68559.2| 465|Caenorhabditis elegans Hypothetical ... 28 3.1
Z77662-9|CAB01198.1| 456|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z81595-1|CAB04753.2| 337|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z69658-2|CAB60997.1| 389|Caenorhabditis elegans Hypothetical pr... 27 7.1
U59213-1|AAB09672.1| 363|Caenorhabditis elegans transmembrane p... 27 7.1
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 27 7.1
AC084153-8|AAK84585.1| 380|Caenorhabditis elegans Hypothetical ... 26 9.4
>AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical
protein T10D4.6 protein.
Length = 796
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 308 HIKQSKVSTTYINTIYFQKVCVKLLPFHTHYM-KLTVLIKISGFF 177
HI++ KV+ Y+N Y + ++LLP TH + K+ ++S +F
Sbjct: 112 HIERHKVAA-YLNRTYLNRRRLRLLPIDTHEITKIAKKCRVSIYF 155
>Z68316-2|CAA92681.1| 352|Caenorhabditis elegans Hypothetical
protein K08E4.3 protein.
Length = 352
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 412 RHSRRPLSQNE*RHKLHFVCFIYTCIIFKFVIYIRI*NNQKYLLRI 275
R RPLS R H + I+T +I KF+I + ++ LLRI
Sbjct: 33 RDDHRPLSSIS-RDLSHSILLIFTYLIVKFIITCHLLSDMYTLLRI 77
>Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical
protein C54E10.4 protein.
Length = 345
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = -1
Query: 395 SFSERIKTQITLRLF-YIYMYYL*V---CYLYTHIKQSKVSTTYINTIYFQK---VCVKL 237
+F + T +L ++ +I+ + L C++Y H ++++ Y +YF+K V +
Sbjct: 84 NFRRFVSTHASLTIWVFIFCFVLSAALTCFVYRHNAAAQINQDYSGKMYFEKLLLVLTHI 143
Query: 236 LPFHTHY 216
PF T +
Sbjct: 144 FPFFTGF 150
>AC084158-9|AAK68559.2| 465|Caenorhabditis elegans Hypothetical
protein Y69A2AR.15 protein.
Length = 465
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -1
Query: 263 YFQKVCVKLLPFHTHYMKL--TVLIKISGFFRIRI*IES 153
Y QKVC++++PF + + L T+L+ + F ++ ++S
Sbjct: 127 YLQKVCMEIMPFFFNNLVLLFTILLGVQRFIVVQYPLQS 165
>Z77662-9|CAB01198.1| 456|Caenorhabditis elegans Hypothetical
protein F47B8.10 protein.
Length = 456
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 311 THIKQSKVSTTYINTIYFQKVCVKLLPFHTHYMKLT 204
THIK V+ Y IYF+++ + LLP + LT
Sbjct: 5 THIKFVVVTIIYFAHIYFRRLPITLLPLIREEIVLT 40
>Z81595-1|CAB04753.2| 337|Caenorhabditis elegans Hypothetical
protein T22H2.1 protein.
Length = 337
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Frame = -1
Query: 323 CYLYTHIKQSKVSTTYINTIYFQKVCV---KLLPFHT----HYMKLT 204
C++Y H ++++ TY + +Y K + L PF T Y KLT
Sbjct: 112 CFVYRHNAAAQINQTYSSKLYLDKFLLFLTHLFPFFTGISMWYSKLT 158
>Z69658-2|CAB60997.1| 389|Caenorhabditis elegans Hypothetical
protein C36H8.2 protein.
Length = 389
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 256 WKYIVFIYVVDTFDCFICVY 315
W ++VF+ VV T +CF +Y
Sbjct: 281 WFWLVFVAVVSTVNCFKWIY 300
>U59213-1|AAB09672.1| 363|Caenorhabditis elegans transmembrane
protein protein.
Length = 363
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 256 WKYIVFIYVVDTFDCFICVY 315
W ++VF+ VV T +CF +Y
Sbjct: 255 WFWLVFVAVVSTVNCFKWIY 274
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 95 FCKRCGHGVYHNELFEIHNDQCQ*N 21
FC RC +G Y+ E + H + C N
Sbjct: 343 FCIRCFNGYYNEEKYVRHFEDCMSN 367
>AC084153-8|AAK84585.1| 380|Caenorhabditis elegans Hypothetical
protein Y22D7AL.11 protein.
Length = 380
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 190 FLVSLEFEFKLRVNLIEK*SKGLDNLLVNVFFFANDADTEYI 65
F V++ + + VNL K D + +VF+++ND T+Y+
Sbjct: 136 FSVNMSVKIGVNVNLKPK-FNAFDQIF-DVFYYSNDTSTDYL 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,398,156
Number of Sequences: 27780
Number of extensions: 151988
Number of successful extensions: 385
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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