Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31279
(413 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 25 0.26
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 25 0.26
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 25 0.26
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 24 0.59
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 2.4
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 2.4
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 22 3.2
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 4.2
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 21 7.3
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 21 7.3
AB201717-1|BAD90662.1| 107|Apis mellifera apime-corazonin prepr... 20 9.6
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 25.4 bits (53), Expect = 0.26
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 115 LLVNVFFFANDADTEYITTNCLKYTMISVN 26
L V + FF +D T +I NCL T+ ++
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDTIFLID 135
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 25.4 bits (53), Expect = 0.26
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 115 LLVNVFFFANDADTEYITTNCLKYTMISVN 26
L V + FF +D T +I NCL T+ ++
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDTIFLID 135
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 25.4 bits (53), Expect = 0.26
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 115 LLVNVFFFANDADTEYITTNCLKYTMISVN 26
L V + FF +D T +I NCL T+ ++
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDTIFLID 135
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 24.2 bits (50), Expect = 0.59
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 357 TKCNLCLYSF*ERGRLECL 413
+KC+LC F E+G CL
Sbjct: 272 SKCSLCQRRFEEQGNYSCL 290
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 22.2 bits (45), Expect = 2.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 290 VSTTYINTIYFQKVCVKLLPFHTHY-MKLTVLIKIS 186
V ++NTIY +K V L ++ Y +K T+ K++
Sbjct: 310 VEFAFVNTIYRRKKTVPLKKVNSKYILKSTLTPKLA 345
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.2 bits (45), Expect = 2.4
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3
Query: 90 AKKNTLTNKLSNPLLYFSIKFTLNLNSNSKETRNLN*N 203
+++ + + LSN ++ + + N N+N+ N N N
Sbjct: 309 SREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNN 346
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 21.8 bits (44), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 51 KQFVVIYSVSASFAKKNTLTNKLSN--PLL 134
K FV+I + + N +TNK N PLL
Sbjct: 73 KTFVIIMKFNGVPSSLNVITNKTGNGGPLL 102
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.4 bits (43), Expect = 4.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 15 KYISLTLIIVYFKQFVVIY 71
KY+ LTLI+ +VVI+
Sbjct: 26 KYLPLTLIVPITLTYVVIF 44
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 20.6 bits (41), Expect = 7.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Frame = -1
Query: 98 FFCKRCGHGVYHNELFEIH 42
+ CK CG G ++ ++H
Sbjct: 204 YVCKACGKGFTCSKQLKVH 222
Score = 20.2 bits (40), Expect = 9.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 336 IHVYIKQTKCNLCLYSF*ERGRL 404
IH + KC++C +F G+L
Sbjct: 141 IHTKERPYKCDVCERAFEHSGKL 163
Score = 20.2 bits (40), Expect = 9.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 336 IHVYIKQTKCNLCLYSF*ERGRL 404
IH + KC +C +F + G+L
Sbjct: 169 IHTGERPHKCTVCSKTFIQSGQL 191
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 20.6 bits (41), Expect = 7.3
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -3
Query: 390 LRTNKDTNYTSSVLYIHVLSLSLLFIY 310
LR+N +T+ S+ + I ++++ F+Y
Sbjct: 257 LRSNANTSSQSAEIRIAKAAITICFLY 283
>AB201717-1|BAD90662.1| 107|Apis mellifera apime-corazonin
preprohormone protein.
Length = 107
Score = 20.2 bits (40), Expect = 9.6
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = -3
Query: 249 MCKTFTFSY 223
MC+TFT+S+
Sbjct: 20 MCQTFTYSH 28
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,309
Number of Sequences: 438
Number of extensions: 1776
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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