Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31278
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 154 4e-39
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 143 8e-36
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 66 1e-12
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 0.80
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.1
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 27 1.4
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 1.8
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 4.3
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 5.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 9.8
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 24 9.8
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 154 bits (374), Expect = 4e-39
Identities = 74/107 (69%), Positives = 92/107 (85%)
Frame = +3
Query: 75 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 254
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 255 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGI 395
YGLVV+VLI+G L++ + LY GFI LGAGL+VG +GLAAGFAIGI
Sbjct: 67 YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGI 111
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 143 bits (347), Expect = 8e-36
Identities = 64/107 (59%), Positives = 84/107 (78%)
Frame = +3
Query: 75 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 254
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 255 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGI 395
YGLV++VLIAG + +Y L+ GFIHL AGLAVG +G+AAG+AIG+
Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGV 113
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 66.5 bits (155), Expect = 1e-12
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Frame = +3
Query: 93 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 272
+G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 273 VLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLAAGFAIGI 395
++ + + + PA + Y GF G+ VG L G +GI
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGI 151
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 0.80
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 78 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 257
+YGPF+ A+ FS Y +G G + S+ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 258 GLVVAVLIAGAL 293
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.1 bits (57), Expect = 1.1
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 54 NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 218
+K+A ++P I F+G ++G + F+ + + ++ G S LI+ S
Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483
Query: 219 IIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLY 320
+ P+V++ IIA + + +++ L + + Y +Y
Sbjct: 1484 VAPLVLSAIIAFFFFCLGIMLRPILGDRSKTYGVY 1518
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 219 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAI 389
II +AG+IA + +++ IAG + G ++ G L LA GF I
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKI 243
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 1.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 332 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 219
DEPF+K +L+ SN++S+ VD N+ D +D
Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 4.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 33 TGPKNCDDYLH 1
TGP N DDY+H
Sbjct: 369 TGPSNTDDYIH 379
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +3
Query: 132 ALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 293
AL +G + + + P+L+ I V+ G+I + GL + + +GA+
Sbjct: 354 ALVEYFGNIDATARLGVIISKEPKLLGLYIFIGVLLGLIGVIGLFICLHFSGAM 407
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 70 IIQSTDPSLELWGRRLLSSSAPWELPMELPSQELVL 177
+I +T L LW R + S W +P + L+L
Sbjct: 1386 LIGTTKGWLLLWDLRFGTLSCSWHMPARIDQMHLLL 1421
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -2
Query: 263 QTVDGNNTRHDDRNDRLHDQLRPHHRH 183
+ + GN T + NDR + HRH
Sbjct: 395 EIIQGNRTIQESNNDRDESTVASIHRH 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,154
Number of Sequences: 5004
Number of extensions: 35381
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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