Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31266
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678... 29 2.9
12_02_0424 + 18949876-18950136,18951467-18951614,18951705-189518... 29 3.9
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724... 29 3.9
05_04_0132 + 18303925-18307164 29 3.9
03_02_0178 + 6195402-6199158,6199438-6200003 29 3.9
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 29 5.2
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 28 6.8
04_04_1171 - 31455136-31455482,31455805-31458982 28 9.0
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 28 9.0
01_01_0862 + 6714041-6714358,6714462-6714603,6715511-6715735,671... 28 9.0
>02_02_0100 -
6783821-6784339,6784815-6784984,6785062-6785164,
6785291-6785454,6786781-6786821,6786933-6787129
Length = 397
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 509 INGKILEVAKNDPAAEISNRKNSKDGTPTLKIFVDSQP 622
I+G+ +EV + P E+S SKDG T KIFV P
Sbjct: 130 IDGRTVEVKRTVPREEMS----SKDGPKTRKIFVGGLP 163
>12_02_0424 +
18949876-18950136,18951467-18951614,18951705-18951855,
18952049-18952174,18952258-18952338,18952426-18952618,
18952693-18952957,18953239-18953480
Length = 488
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 449 SSLKIESPGLPLVGTVRDSEI-NGK-ILEVAKNDPAAEISNRKN 574
S ++ +P +G++ S+I GK I ++A NDP I RKN
Sbjct: 400 SEAGVDDGTVPPIGSINMSDIMTGKCIAKIAANDPTLRIGPRKN 443
>06_03_0500 +
21470681-21470952,21471049-21471089,21472322-21472485,
21472577-21472679,21472806-21472975,21473766-21474239
Length = 407
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 509 INGKILEVAKNDPAAEISNRKNSKDGTPTLKIFVDSQP 622
I+G+ +EV + P E+S SKDG T KIFV P
Sbjct: 155 IDGRTVEVKRTVPREEMS----SKDGPKTRKIFVGGIP 188
>05_04_0132 + 18303925-18307164
Length = 1079
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 11 FNEATQSYTKLYKKENKTKSEINDTPIPFSLTNNSLPAGKSTLNSTSVGQSTLDQLSSD 187
FN+ Q + + + SE +DT +L +NS P +G S L + SSD
Sbjct: 670 FNDGAQMVPDITTQTTEDASEESDTAQETTLDDNSTPLAAGAQMELGIGTSELIEGSSD 728
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 122 AGKSTLNSTSVGQSTLDQLSSDYPDDLKQVNNVGSGLKNMNSEAVIQES---QITTSQIV 292
AG+ST S+++ + + Q ++ + V+ G+G + N EA IQE Q T+ V
Sbjct: 382 AGQST--SSNIRKDAIQQKATIRDETTNAVDEAGNGTSSSNQEAAIQEKVPVQDETTNAV 439
Query: 293 FDEVLG 310
+ LG
Sbjct: 440 DESGLG 445
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/79 (18%), Positives = 32/79 (40%)
Frame = +2
Query: 5 IHFNEATQSYTKLYKKENKTKSEINDTPIPFSLTNNSLPAGKSTLNSTSVGQSTLDQLSS 184
I N QS + +KSE+ D + +TN + S + Q+ +D +
Sbjct: 534 IAVNSTRQSPLNCVSSPSISKSEVKDGDGDYQVTNMASKTSTSVIRKDQSNQAAIDTATE 593
Query: 185 DYPDDLKQVNNVGSGLKNM 241
D + ++ + G+ ++
Sbjct: 594 DTRSESTDIDRLSVGVSSV 612
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +2
Query: 104 TNNSLPA-GKSTLNSTSV---GQSTL-DQLSSDYPD-DLKQVNNVGSGLKNMNSEAVIQE 265
TN+SL + T + ++V G+ T D ++ P D K+ N GS + ++EAV E
Sbjct: 327 TNDSLSVKAEETCHQSNVATCGEKTPEDDATTREPTVDTKEEQNQGSVEEMKDAEAVDTE 386
Query: 266 SQITTSQIVFDEVL 307
+ S + FDE +
Sbjct: 387 ETVQQSSVAFDEAI 400
>04_04_1171 - 31455136-31455482,31455805-31458982
Length = 1174
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 68 SEINDTPIPFSLTNNSLPAGKSTLNSTSVGQSTLDQLSSDYPDDL 202
+++ + + F+L + LPAG L S + L+ D PDDL
Sbjct: 401 TQLANASMSFNLFSGPLPAGLGRLQSLMFLSLGQNSLAGDIPDDL 445
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 440 SPTSSLKIESPGLPLVGTVRDSEINGKILEVAKNDPAAEISNRKNSKDGT 589
S T + I L V ++ DSE++ ++ V KND K+ DGT
Sbjct: 187 SSTFAAGIALEALSAVISLADSEVDSSMIAVVKNDIVKLFDTIKSYDDGT 236
>01_01_0862 +
6714041-6714358,6714462-6714603,6715511-6715735,
6715769-6716763,6717327-6717381,6717469-6717621,
6718130-6718299,6718388-6718870
Length = 846
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 630 RTFGCESTKIFSVGVPSFEFFRLLISAA 547
R F C I SVGVPSF + +LI A
Sbjct: 59 RDFWCVCKNILSVGVPSFSWPAVLIDDA 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,780,314
Number of Sequences: 37544
Number of extensions: 318093
Number of successful extensions: 794
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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