Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31265
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.11
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.14
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 31 0.14
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 29 0.57
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 3.1
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 3.1
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 4.0
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 4.0
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 26 4.0
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.3
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 26 5.3
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 25 7.1
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 25 7.1
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.3
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 31.5 bits (68), Expect = 0.11
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 457 DTSIGKNTTENGRMETNQKETPNKKKRPQKNLKSNPSIL 341
+T N + NG ++++ K+ N K+ P+K ++S PSIL
Sbjct: 280 ETDKSSNLSSNGEVKSDLKQD-NGKEEPEKEVESTPSIL 317
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.1 bits (67), Expect = 0.14
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 560 RSYSPERRDKDRDSYSRFSA-ERDSHRSEGEYEEERYVDRKEY 435
RS SP R + RD Y R RD++R G +E RY R EY
Sbjct: 185 RSRSPPARRRYRDDYRRGGDYRRDAYRP-GRDDERRYAPRGEY 226
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 506 SAERDSHRSEGEYEEERYV-DRKEYDGKWADGNE 408
S ER+ + + ++ERY +RKEYD K A+G +
Sbjct: 59 STEREPYEEKARQDKERYERERKEYDTKLANGEK 92
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 29.1 bits (62), Expect = 0.57
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 377 PFLLVGCFFLVRFHPPIFRRILSYRRIFLLHIH 475
PFLL+ FF ++ PP + + IFL IH
Sbjct: 493 PFLLICIFFYIQSSPPFYYGYALFPTIFLQLIH 525
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 577 QDAPFPDPTVRRDAIKIEIVILASLPNVTAI 485
QD P PD V++ + + +L SL N T I
Sbjct: 77 QDGPIPDENVKKHVRETLLHLLVSLDNFTLI 107
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = -3
Query: 614 IVEDDIRDRAVLT---GRAVPRSYSPERRDKDRDSYSRFSAERDSHRSEGEYEEERYVDR 444
I++ D DR G R Y+ + + + D F AE + + E +EE D
Sbjct: 300 IIDSDRMDRLKRIKQEGAGQYRGYNKDLEENEEDDLGDFIAEEEEEEEQEEEQEEDEEDE 359
Query: 443 KE 438
+E
Sbjct: 360 EE 361
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 148 SSIFTSKRLQIQVSNQSTHSVFHKV*HFFLLILRNW 255
++IF+ L+++ + S+F K+ FF ++LR++
Sbjct: 106 NNIFSFDELELEERSNRPRSIFGKIKQFFNILLRSF 141
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Frame = -3
Query: 596 RDRAVLTGRAVPRSY---SPERRDKD--RDSYSRFSAERDSHRSEGEYEEER----YVDR 444
RDR + R+ R Y S R D+ RD Y ERD + + ER Y D
Sbjct: 334 RDRKRSSSRSDDREYHRRSDGRYDRSNYRDDYRHRRKERDHRDDQSSFRNERFSNYYGDD 393
Query: 443 KEYDGKWADGNE 408
+ Y + GN+
Sbjct: 394 RSYHKRRNTGNK 405
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -1
Query: 496 VTAIAVRVNMKKKDTSIGKNTTENGRMETN----QKETPNKKKRPQKNLKSNPSILCTKC 329
VT+++ + K++ S+ + N R E +K T K K PQ L S+L KC
Sbjct: 128 VTSLSTGLLSKREKWSLWEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKC 187
>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 94
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 154 IFTSKRLQIQVSNQSTHSVFHKV*HFFLLILRNWLTIKKWLNLHSAPNPV 303
IF S R + + + S + FH + + +L +WL KK ++ +P+
Sbjct: 8 IFASFRTEEEERSYSRKAFFHLIGYITCSVLFSWLVRKKVISSPVVSSPI 57
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 142 QMSSIFTSKRLQIQVSNQS 198
Q+SSIF +KRL+ V+NQ+
Sbjct: 306 QVSSIFVNKRLRKSVNNQA 324
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -1
Query: 508 SLPNVTAIAVRVNMKKKDTSIGKNTTENGRMETNQKETPNKKKRPQKNLKSNPSIL 341
S+P+ T+ + + + + + GK+ N R + N KK P +N K +L
Sbjct: 167 SVPSKTSTIDKTDTRSTEKTKGKDIFSNARNQKGNSSRKN-KKAPLENHKEKEPLL 221
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 388 KKKRPQKNLKSNPSILCTKC 329
++ R QK L+ P+++C+KC
Sbjct: 161 REGRVQKALRPTPNLICSKC 180
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 126 CLHYNSNVIYIYK*TITNTGFESEYTQCLSQSLTL---FFVNIKKLAYNQKMAKSTFSTQ 296
CL +NS +Y Y ++ T F + S+ + + I +LA+N AK+ + +
Sbjct: 246 CLQFNSPKLYAYLKSLRETWFSDDSNILSPLSIKVQPENLLTIARLAWNNVTAKANDTRK 305
Query: 297 S 299
S
Sbjct: 306 S 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,157
Number of Sequences: 5004
Number of extensions: 43858
Number of successful extensions: 213
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -