Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31265
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.36 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 256 LTIKKWLNLHSAPNPVLQSE*PTTNIWC-KEY*DYSL 363
           LT+K  L L    +  L+++  TTN+W  +E+ DY L
Sbjct: 46  LTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKL 82


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 524 DSYSRFSAERDSHRSEGEYEEERYVDRKEYDGK 426
           DS+ R S+   +H S+   +++  +  KE D K
Sbjct: 219 DSFHRLSSHTLNHNSDKMSDQQENLTLKEVDNK 251


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 617 AIVEDDIRDRAVLTGRAVP-RSYSPERRDKDRDSYSRFSAERDSHRSEG-EYEEERYVDR 444
           AI  + +R R+    R     S   + R +DR+SY R   ER   R    EY+++R  D+
Sbjct: 211 AISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY-RNDGERSCSRDRSREYKKDRRYDQ 269


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 256 LTIKKWLNLHSAPNPVLQSE*PTTNIWCKE-Y*DYSL 363
           LT+K  L L    +  L+++  TTN+W ++ + DY L
Sbjct: 50  LTVKIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKL 86


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 10/42 (23%)
 Frame = -3

Query: 533 KDRDSYSRFSAERD----SHRSEGEYEE------ERYVDRKE 438
           ++R S+ R+S  R+    S+++E EY +      ER+ DR+E
Sbjct: 264 EERTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRDRRE 305


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 256 LTIKKWLNLHSAPNPVLQSE*PTTNIWCKE-Y*DYSL 363
           LT++  L L       L+++  TTN+W ++ + DY L
Sbjct: 59  LTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKL 95


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 478 RVNMKKKDTSIGKNTTENGRMETNQKETPNKKKRPQKN 365
           R N  K++ +   +  +NG  +   K+  NK+   ++N
Sbjct: 474 RQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQN 511


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 406 QKETPNKKKRPQKNLKSNPSIL 341
           QK    KKKR +KNL  N  ++
Sbjct: 1   QKVHQLKKKRRKKNLNQNQMMI 22


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 551 SPERRDKDRDSYSRFSAERDSHRSEGEYEEERYVDR 444
           SP RR+KDR S    ++         E  EE  +DR
Sbjct: 313 SPLRREKDRGSREYPTSNATDTDGTKERTEEVALDR 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,655
Number of Sequences: 438
Number of extensions: 3151
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)