Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31264
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 45 3e-06
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 40 9e-05
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 31 0.075
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 0.70
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 1.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 2.1
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 2.8
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 3.7
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 25 4.9
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 24 6.5
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 24 8.6
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 45.2 bits (102), Expect = 3e-06
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +3
Query: 261 PSHIKVNLXALSPTMESGSIVSWEKKEGDKLSEGDL 368
P+H +N+ ALSPTM +G+I +++KK GDK+ GD+
Sbjct: 51 PAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDV 86
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 40.3 bits (90), Expect = 9e-05
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 282 LXALSPTMESGSIVSWEKKEGDKLSEGDL 368
+ ALSPTME G+I W KEGD GD+
Sbjct: 40 MPALSPTMEEGNITKWHFKEGDSFKSGDI 68
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.075
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 186 LEHAQNQTVLSTPQWTVXMRYYSSLPSHIKVNLXALSPTMESGSIVSWEKKEGDKLSE 359
L Q Q +++ P W YY +P H + L T+ S WE++ G++ ++
Sbjct: 257 LRFTQRQILMNDPYWNRGF-YYDGVPPHTGMKLAREVATISYRSGPEWEQRFGNRRAD 313
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.5 bits (58), Expect = 0.70
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 84 RNQILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVXMRYYSSLP 263
++ L D + IRS ++ LA +V + LE + + V T QW M + +
Sbjct: 1060 KSPFLGDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTL 1119
Query: 264 SHIKVNLXALS 296
I+ N LS
Sbjct: 1120 QQIRQNRNELS 1130
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 1.6
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 171 VTNKLLEHAQNQTVLSTPQWTVXMRYYSSLPSHIKVNLXALSP-TMESGSIVS 326
V+NK L HAQ + S P + + S PS + +++P T+E+G++ S
Sbjct: 177 VSNKSLPHAQQSIIRSFPDIQKQPKGFFSYPSS---TVSSIAPSTLEAGNLHS 226
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 2.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 111 KKAIRSNITRCISTELAKRKVTN 179
K A+R+NI RC+ T + + N
Sbjct: 3460 KSAVRTNIERCVQTSIESKYYKN 3482
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 56 IDNVANNCVTESNLKRWS*ESYTVEH 133
I+NVANN + L WS Y V+H
Sbjct: 157 INNVANNSLKVKPLTLWSTLLYIVQH 182
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.0 bits (52), Expect = 3.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 93 FDSVTQLFAT-LSIFFTKTIPS 31
F+S T + +T L +FFT+T PS
Sbjct: 820 FESTTLVLSTGLDVFFTRTAPS 841
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 126 SNITRCISTELAKRKVTNKLLEHAQNQTVLST 221
S +++C LA++++T L A QTV T
Sbjct: 461 SELSKCHEASLAEKQLTYNLAMEALEQTVRET 492
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 201 NQTVLSTPQWTVXMRYYSSLPSHIKVNLXALSPTMESGSIVSWEKKE 341
N + +TP W V S+L + + + AL P+ V KK+
Sbjct: 646 NSSAANTPSWGVRKARASALNARSEEDFPALPPSTSKRISVQLGKKQ 692
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 309 SGSIVSWEKKEGDKLSEGDL 368
SG+IV KEG K+ +GD+
Sbjct: 1122 SGTIVEIRVKEGAKVKKGDI 1141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,458
Number of Sequences: 5004
Number of extensions: 28326
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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