Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31264
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 50 8e-07
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 48 2e-06
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 48 2e-06
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 39 0.001
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 38 0.003
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 37 0.006
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 31 0.28
10_03_0040 - 7307108-7307564,7307611-7307915 30 0.49
10_06_0140 + 11147019-11147791,11148301-11150524 27 4.6
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 27 4.6
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 27 6.1
08_01_0374 + 3301301-3301521,3301723-3301852,3301895-3301903,330... 26 8.1
03_05_0675 + 26630466-26632070 26 8.1
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 26 8.1
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 49.6 bits (113), Expect = 8e-07
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +3
Query: 147 STELAKRKVTNKLLEHAQNQTVLSTPQWTVXMRYYSSLPSHIKVNLXALSPTMESGSIVS 326
ST + ++ + L Q Q + + + +R + P H+ V + ALSPTM G+I
Sbjct: 111 STAIGPARLLWQQLIGLQQQAMGTVSACSSWIRPTARFPPHLVVGMPALSPTMNQGNIAK 170
Query: 327 WEKKEGDKLSEGDL 368
W K+EG+K+ GD+
Sbjct: 171 WRKQEGEKIEVGDV 184
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 252 SSLPSHIKVNLXALSPTMESGSIVSWEKKEGDKLSEGDL 368
+ LP H ++ + +LSPTM G+I W KKEGDK+S G++
Sbjct: 113 ADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEV 151
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 252 SSLPSHIKVNLXALSPTMESGSIVSWEKKEGDKLSEGDL 368
+ LP H ++ + +LSPTM G+I W KKEGDK+S G++
Sbjct: 1616 ADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEV 1654
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 273 KVNLXALSPTMESGSIVSWEKKEGDKLSEGD 365
++ + ALS TM G IVSW EGD+L++GD
Sbjct: 51 EIFMPALSSTMTEGKIVSWTASEGDRLAKGD 81
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 273 KVNLXALSPTMESGSIVSWEKKEGDKLSEGD 365
++ + ALS TM G IVSW EGD++++GD
Sbjct: 48 EIFMPALSSTMTEGKIVSWSAAEGDRVAKGD 78
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 36.7 bits (81), Expect = 0.006
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 273 KVNLXALSPTMESGSIVSWEKKEGDKLSEGD 365
++ + ALS TM G IVSW EGD++++GD
Sbjct: 43 EIFMPALSSTMTEGRIVSWTAAEGDRVAKGD 73
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 31.1 bits (67), Expect = 0.28
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 252 SSLPSHIKVNLXALSPTMESGSIVSWEKKEGDKLSEGDL 368
+ L HI +L +S G+I W KKEGDK+S G++
Sbjct: 74 NGLRVHIHCSLFIISG---QGNIARWVKKEGDKVSPGEV 109
>10_03_0040 - 7307108-7307564,7307611-7307915
Length = 253
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +3
Query: 153 ELAKRKVTNKLLEHAQNQTVLSTPQWTVXMRYYSSLPSHIKVNLXALSPTMESG 314
E+A + +++ + + T L PQW + YSS PS++++ L +L+ + SG
Sbjct: 173 EVASGRRRSQVFDVCSSATRL--PQWRRRQQDYSSTPSNLQLRLGSLTMVISSG 224
>10_06_0140 + 11147019-11147791,11148301-11150524
Length = 998
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 135 TRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVXMRYYSSLPSHI 272
+RC L K+ + L +H + L+ + V + +YSSLP H+
Sbjct: 360 SRCQQQPLGCAKLCDNLGKHLVTEDTLARMK-RVLVHHYSSLPGHV 404
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 124 GRTLRGALVQNWQKGK 171
GRT+ G + +NWQ+GK
Sbjct: 317 GRTIAGLIWENWQQGK 332
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 26.6 bits (56), Expect = 6.1
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +2
Query: 44 LVKNIDNVANNCVTESNLKRWS*ESYTVEHYEVH*YRTGKKESYE*IVRTCTEPDSSIYT 223
L + ANN + E + S +E H TG ++ ++RT E DSS+Y
Sbjct: 412 LTSTNNETANN-IMEGKVSASSSPEELLEQALQH-LETGNQDQAIPLIRTAIEKDSSLYV 469
Query: 224 TMDCSXEVLFESTI 265
+ + LF + +
Sbjct: 470 ALIGMGQTLFSNRL 483
>08_01_0374 +
3301301-3301521,3301723-3301852,3301895-3301903,
3302349-3302486,3302616-3302948,3303280-3303463,
3303647-3303819
Length = 395
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 243 RYYSSLPSHIKVNLXALSPTMESGSI 320
RY SLP + K A PTM SG++
Sbjct: 297 RYVRSLPQYPKQQFRARFPTMSSGAM 322
>03_05_0675 + 26630466-26632070
Length = 534
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 114 KAIRSNITRCISTELAKRKVTNKLLEH 194
KA + ++ C+ E AKR KLL H
Sbjct: 295 KAFKDMVSSCLCQEPAKRPSAEKLLRH 321
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 26.2 bits (55), Expect = 8.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 67 NIINIFY*NYSVQMSGTVFWK 5
N++ IF+ ++ M GT+FW+
Sbjct: 1253 NLVRIFFALFTALMLGTIFWR 1273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,226,387
Number of Sequences: 37544
Number of extensions: 162065
Number of successful extensions: 424
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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