Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31263
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    26   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   3.1  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   4.1  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    25   5.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    24   7.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   7.2  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    24   7.2  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           24   7.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   9.5  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    24   9.5  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    24   9.5  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.5  

>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 195 PPRWRRLEWSILRNTPLGQNQRGLRI 272
           P    +L +SI RNT  G+N RGL +
Sbjct: 37  PEETEKLLYSIKRNTLGGKNNRGLAV 62


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 105 SPITLPPGTPVLAVVGATTTSPLGRQAIRSPP 200
           +P +LPP  P    +GA    PL   A  +PP
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 175 PRGLVVVAPTTASTGVPGGRVM 110
           P G+V+ +P+ A+  +PG  VM
Sbjct: 293 PPGMVMASPSPAAATIPGAPVM 314


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 54  HEKAKGGQVKRLVRSTXSPITLPPGTPVLAVV 149
           + KAKGG +   +      + +  GT +LA+V
Sbjct: 58  YAKAKGGSINSQIEIAFDRLLIEFGTKILAIV 89


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 109 PSPSPPGRRYWRSSAPRPPALSVG 180
           P P PP   +W+ S    PA + G
Sbjct: 309 PPPPPPSNDFWKDSNEPAPADNKG 332


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 114 TLPPGTPVLAVVGATTTSP 170
           T+P GTP  ++ GA T+ P
Sbjct: 239 TIPKGTPSTSIEGAKTSIP 257


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 161 HQPSR--SAGYPKPA*MAPVRMVYPTEYPAGSEPAWVEDSRPSIT 289
           + PSR  S+   KPA ++P    +  E P+GS P     SR + T
Sbjct: 112 NNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSVPPSASVSRANST 156


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 163 VVVAPTTASTGVPGGRVMGXYVLRTKRF 80
           V++A   +STG+P G V+  Y+   + F
Sbjct: 336 VLMALLMSSTGLPAGNVLNTYLTAAQFF 363


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 220  GLSYGIPRWVRTSVG 264
            GL +G PRW++T  G
Sbjct: 2255 GLGFGAPRWLQTLWG 2269


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 98  HIXSHHPPPRDAGTGGRRRHDHQP-SRSAGYPKP 196
           H+ S+H  P   G+G R R+   P S S G   P
Sbjct: 260 HLNSNHISPASFGSGIRTRNIFNPESMSLGLKPP 293


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 390 GSPHMSAWGPAKGA*EDDVQAALHAFYA-RAMSIRVMEGRLSS 265
           GSP     GP  G    D+Q  L AF+A R+ S+  +  ++SS
Sbjct: 128 GSPPTPP-GPFPGGLSTDIQEKLKAFHASRSKSMPEVVNKISS 169


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
 Frame = +2

Query: 23  PTSKPR-MRQNS*KGKGGTSEAFSAEHIXSHHPPPRDAGTGGRRRHDHQPSRSAGYPKPA 199
           P   PR + QNS    G    A +A        PP  A    RR      S S+G   P 
Sbjct: 189 PVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSSGVSSPT 248

Query: 200 *MAP 211
            + P
Sbjct: 249 SVPP 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,170
Number of Sequences: 5004
Number of extensions: 38303
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)