Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31263
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79752-6|CAB02080.2|  423|Caenorhabditis elegans Hypothetical pr...    29   0.88 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    27   3.6  
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    27   6.2  
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    27   6.2  
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AC024790-2|AAF60638.1|  220|Caenorhabditis elegans Ground-like (...    26   8.2  
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    26   8.2  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    26   8.2  

>Z79752-6|CAB02080.2|  423|Caenorhabditis elegans Hypothetical
           protein D2005.6 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 109 PSPSPPGRRYWRSSAPRPPALSVGRL-SEARLDGAG 213
           P+PSPP R     S PR  A ++G L +E+R  G G
Sbjct: 129 PAPSPPRRSRTAPSRPRSTAPTMGTLGAESRRGGRG 164


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 94  GAHXLPSPSPPGRRYWRSSAPRPP 165
           G   +P P PPG RY     P PP
Sbjct: 329 GMGGMPPPPPPGMRYPGGMPPPPP 352


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 94  GAHXLPSPSPPGRRYWRSSAPRPP 165
           G   +P P PPG RY     P PP
Sbjct: 339 GMGGMPPPPPPGMRYPGGMPPPPP 362


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 5   PPVSQ-QPTSKPRMRQNS*KGKGGTSEAFSAEHIXSHHPPPRDAGTGGRRRHDHQPSRSA 181
           PP+ + +P  K    + +  G GG +   +  +  ++ PPPR+ G         +P  S+
Sbjct: 465 PPIPEPKPLCKGLKFKKTANGGGGNNNNNNNNNNRNNGPPPRNNGNNNGNGRPMKPPSSS 524

Query: 182 G 184
           G
Sbjct: 525 G 525


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 5   PPVSQQPTSKPRMRQNS*KGKGGTSEAFSAEHIXSHHPPPRDAGTGGRRRHDHQ 166
           PP  Q  TS   +  +S  G   TSE+ S+         P+ +     +R D Q
Sbjct: 705 PPTPQNTTSSSDVSSSSSGGSASTSESSSSAPSAEQVSTPKKSKKNKEKRRDQQ 758


>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 139 WRSSAPRPPALSVGRLSE 192
           WRSSAP  PA S G+L++
Sbjct: 897 WRSSAPISPASSSGQLTD 914


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 59  KGKGGTSEAFSAEHIXSHHPPPRDAGTGGRRRHDHQPSRSAGY 187
           +G GG    ++       +   RD G G +R HD Q  R  GY
Sbjct: 785 RGGGGGGGGYNDRQDFGRNYGGRDGG-GPQRYHDQQQQRQGGY 826


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 139 WRSSAPRPPALSVGRLSE 192
           WRSSAP  PA S G+L++
Sbjct: 897 WRSSAPISPASSSGQLTD 914


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 212 PAPSRRASDSLPTERAGGRGADDRQYRRP 126
           P  SRR S S    R+  R AD+R+ R P
Sbjct: 242 PKRSRRESKSKSRSRSRSRSADNRKSRSP 270


>AC024790-2|AAF60638.1|  220|Caenorhabditis elegans Ground-like (grd
           related) protein 5 protein.
          Length = 220

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 68  GGTSEAFSAEHIXSHHPPPRDAGTGGRRRHDHQPSRSAG 184
           GG+S   SA       PPP   G GG  R    P+ +AG
Sbjct: 21  GGSSCGCSAPPACPPPPPPSPCGGGGYARAYSAPTFTAG 59


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 65  KGGTSEAFSAEHIXSHHPPPRDAGTGGRRRHDHQPSRSA 181
           K G   + S E   S  PPPR  G GG+      P+ S+
Sbjct: 681 KSGQPPSTSREWNQSSAPPPRMGGMGGQPPMSRVPASSS 719


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 65  KGGTSEAFSAEHIXSHHPPPRDAGTGGRRRHDHQPSRSA 181
           K G   + S E   S  PPPR  G GG+      P+ S+
Sbjct: 681 KSGQPPSTSREWNQSSAPPPRMGGMGGQPPMSRVPASSS 719


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,641,768
Number of Sequences: 27780
Number of extensions: 261959
Number of successful extensions: 809
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)