Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31256
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 159 2e-40
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 158 7e-40
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.43
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.57
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 29 0.57
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.75
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 28 0.99
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 1.7
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.0
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 5.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 5.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 5.3
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 5.3
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 26 5.3
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 7.0
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 9.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 9.2
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 159 bits (387), Expect = 2e-40
Identities = 79/173 (45%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Frame = -1
Query: 623 LTPLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVP 444
L Y G T+ G+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +P
Sbjct: 115 LADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIP 174
Query: 443 HSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSXEQDDEDSFKXQFSKYIKXGVTAD 264
HS RFPG+D E+++ + E R +I+G HVAEYM DDE+ ++ QFS I G+ +D
Sbjct: 175 HSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESD 234
Query: 263 AIEAIYKKAHEAIRADPSPKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 111
+E IY +A+ IR DPS +K K+ + ++ +RKLT ERK R K
Sbjct: 235 QLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 158 bits (383), Expect = 7e-40
Identities = 79/173 (45%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Frame = -1
Query: 623 LTPLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVP 444
L Y G T+ G+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +P
Sbjct: 115 LADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIP 174
Query: 443 HSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSXEQDDEDSFKXQFSKYIKXGVTAD 264
HS RFPG+D E+++ + E R +I+G HVAEYM DDE+ ++ QFS I G+ +D
Sbjct: 175 HSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESD 234
Query: 263 AIEAIYKKAHEAIRADPSPKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 111
+E IY +A+ IR DPS +K K+ + + +RKLT ERK R K
Sbjct: 235 QLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.43
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 260 IEAIYKKAHEAIRADPSPKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 102
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.1 bits (62), Expect = 0.57
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = -1
Query: 245 KKAHEAIRADPSPKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFIKRLQAQA 75
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + K++ ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQMSRES 765
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 29.1 bits (62), Expect = 0.57
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 227 IRADPSPKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQA 75
+ A P P K E+KK K KR T A + +Q+K +IK+++ +A
Sbjct: 418 VMALPKPSK-EMKKKLKKSPPKRKRITTRASYDRQKEQRKKEYIKKVKKEA 467
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 0.75
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 233 EAIRADPSPKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 102
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 28.3 bits (60), Expect = 0.99
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 221 ADPSPKKKELKKDSVKQKRWNKRKLTLAERKN 126
+DP P + KK SV +K W +R+ TL +++
Sbjct: 76 SDPLPAEFYFKKGSVGEKDWQERQKTLKGKES 107
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 224 RADPSPKKKELKKDSVKQKRWNKRKLTLA--ERKNRIKQ 114
RA +P++K +K K+ + KRK + E+K ++KQ
Sbjct: 478 RAKETPEEKRARKKKTKEDKAEKRKSKIPKYEKKRKLKQ 516
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 259 LKPSTRKPMKPSVRIHPP 206
L PS RKP+ V++HPP
Sbjct: 384 LLPSLRKPLLNFVKVHPP 401
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -1
Query: 329 QDDEDSFKXQFSKYIKXGVTADAIEAIYKKAHEAIRADPSPKKKELKKDSVKQK 168
+++++S + +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 272 TADAIEAIYKKAHEAIRADPSPKKKELKKDSVKQKRWNKRKLTLAERKNRI 120
TA IEA+YKKA+ A S K ++ + KR L + NR+
Sbjct: 174 TAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIANDADPKRAQMLVHQINRL 224
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 5.3
Identities = 23/101 (22%), Positives = 38/101 (37%)
Frame = -1
Query: 398 FNAEVHRAHIFGLHVAEYMRSXEQDDEDSFKXQFSKYIKXGVTADAIEAIYKKAHEAIRA 219
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 218 DPSPKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 96
KKE D +K + ++ R + K S +
Sbjct: 419 SSENNKKE---DDLKDSTGDLNTTQVSSRVDNFLLKLPSMV 456
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = -1
Query: 257 EAIYKKAHEAIRADPSPKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 78
EA K+ + ++ + K++EL++ QKR K+K E+K + +Q++A K + Q
Sbjct: 636 EARKKREEQRLKREQEKKQQELER----QKREEKQKQKEREKKLKKQQQEADREKMAREQ 691
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 263 AIEAIYKKAHEAIRADPSPKKKELKKDSVKQKRWNKRK 150
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 257 EAIYKKAHEAIRADPSPKKKELKKDSVKQKR-WNKRKLTLAERKNRIKQKKASFIKR 90
EAI + EA RA +EL + QKR +R E K R +++ A ++R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLER 844
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 251 IYKKAHEAIRADPSPKKKELKKDSVKQKRWNKRKLTLAERKNR 123
I+K+ E +R P ++E+KK + K++ T +E K +
Sbjct: 114 IFKRRSEVVRGADEPTEEEIKKGEAADEN-EKKEPTSSESKKQ 155
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 218 DPSPKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 111
D KK + +K+ ++Q+R KRK L + ++K+K
Sbjct: 89 DNEAKKMKREKEILRQQR-QKRKSELTQLSQKVKEK 123
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 206 KKKELKKDSVKQKRWNKRK 150
KKK+ KK + K+K+ NKRK
Sbjct: 436 KKKKKKKKNNKKKKKNKRK 454
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 245 KKAHEAIRADPSPKKKELKKDSVKQKRWNKRKLTLAERKNRIKQ 114
KK H A + P +KK+LKK S N + +A +Q
Sbjct: 4 KKGHYAKHSGPKAEKKKLKKVSDGSASNNPKAFAVASAGRMARQ 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,709
Number of Sequences: 5004
Number of extensions: 43429
Number of successful extensions: 210
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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