Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31255
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 292 AATNMTFALCFNSNYVRRFFYVW 360
           +A  +TF +C+   +V+R  YV+
Sbjct: 263 SAVVITFFICWAPFHVQRLLYVY 285


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -1

Query: 286 NIKKCKLNFQDKNKFHYEKRTYKKMLDXDHYFKKI 182
           N    K N+   NK++Y    Y K L   +Y   I
Sbjct: 92  NNNNYKYNYN--NKYNYNNNNYNKKLYYKNYIINI 124


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 292 RINIKKCKLNFQDKNKF 242
           RINI++ K  +Q  NK+
Sbjct: 495 RINIERMKQVYQQLNKY 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,580
Number of Sequences: 438
Number of extensions: 2792
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)