Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31254
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    41   2e-04
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    32   0.054
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    27   2.7  
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    25   6.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.2  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   6.2  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    25   6.2  

>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
 Frame = +2

Query: 212 LAKLRKKTGYTIANCKKALEMHN-NDADKAETWLHEQAQAMGWAKATKLAGRTALQGLV- 385
           + KLR +T  ++   K+++E     + + A   L ++    G   A K   RTA +G + 
Sbjct: 37  IKKLRSETNASMDLVKQSVEEAGVGNLELAREILKKKIVQRGGKLAEKSKNRTAKEGWII 96

Query: 386 -AVKFDKNHGALVELNCETDFVAKNDKFQKM 475
             +  D     + E+NCE+DFVA+   FQ +
Sbjct: 97  QCISEDGRKAVMAEINCESDFVAQTTPFQDL 127


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 441  SVSQLSSTRAPW-FLSNLTATNPWRAVLPANLVAFAHPIAWACSWSHV-SALSASLLCIS 268
            S  +L+ST   W F++N+  + PW   LP+ +    H  +     S + + L   LLCIS
Sbjct: 3948 SYLKLASTEPLWLFINNIHLSTPWAEKLPSKMSNHLHKNSRIVCLSEIHNQLPHQLLCIS 4007

Query: 267  NAFL 256
             + +
Sbjct: 4008 RSIV 4011


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 236 GYTIANCKKALEMHNNDADKAETWL 310
           G+T+A  +K L   NN+ ++A  W+
Sbjct: 652 GFTVAQARKGLLESNNNIERAVDWI 676


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 176 TSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNND 286
           T P Y   ES   AK+ K+ G+ +      L  H+N+
Sbjct: 301 TFPFYHLIESEGFAKMAKRLGHGVYGLPYYLVFHHNE 337


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 179 SPAYKAAE-SSLLAKLRKKTGYTIANCKKALEMHNNDADKAETW 307
           +PAY+  E   ++ K +K+TG    N K  +       D A+ W
Sbjct: 345 NPAYEKWEVREVVGKKKKRTGILAINNKSIVLTFTKTMDAAQVW 388


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 173 HTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMG 334
           H    +   +S L   +R      +A   K +E     A KA+TWL    +A+G
Sbjct: 741 HKDECFPNTDSDLTVLVRYDDNALLAAYSKVVER----AHKADTWLENYKEALG 790


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 401 KNHGALVELNCETDFVAKNDKFQKMIEDAA 490
           K +G +V++N   DF+ K    +  I+DAA
Sbjct: 258 KTNGGVVQVNFYQDFIRKPGSDRATIDDAA 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,519
Number of Sequences: 5004
Number of extensions: 47090
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)