Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31254
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 73 2e-13
08_02_0591 - 19051748-19051807,19053044-19053133,19053238-190533... 72 4e-13
02_05_0033 + 25250312-25250563,25251469-25251540,25251925-252520... 33 0.22
11_06_0445 - 23679918-23680282,23680415-23683349 31 0.68
07_03_1390 + 26217623-26218370,26218435-26218934 29 2.7
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691... 29 3.6
08_02_0478 + 17621678-17623768 28 6.3
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 28 6.3
03_04_0089 - 17217235-17217461,17218298-17218418 28 6.3
04_04_1555 + 34376612-34376887,34377306-34377450,34377891-343780... 27 8.4
01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538 27 8.4
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = +2
Query: 179 SPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKATKLA 358
S A +L+ +LR+ TG + +CKKAL D +KA+ +L ++ G A A K A
Sbjct: 681 STATATISPALVKQLREATGAGMMDCKKALAESGGDIEKAQEFLRKK----GLAAADKRA 736
Query: 359 GRTALQGLVAVKF-DKNHGALVELNCETDFVAKNDKFQKMIEDAAI 493
GR +G + D G L+E+NCETDFV++ D F+++++D A+
Sbjct: 737 GRATAEGRIGSYIHDSRIGVLIEVNCETDFVSRGDIFKELVDDLAM 782
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +2
Query: 194 AAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKATKLAGRTAL 373
A ++L+ +LR +TG + +CKKAL D +A+ +L ++ G + A K + R
Sbjct: 927 AISAALVKQLRDETGAGMMDCKKALAETGGDIQQAQEFLRKK----GLSSADKKSSRLTA 982
Query: 374 QGLVAVKFDKNH-GALVELNCETDFVAKNDKFQKMIEDAAI 493
+GL+ N G ++E+N ETDFVA+N+KF++++ D A+
Sbjct: 983 EGLIGAYIHDNRIGCMIEINSETDFVARNEKFKELVNDLAM 1023
>08_02_0591 -
19051748-19051807,19053044-19053133,19053238-19053363,
19053920-19054104,19054644-19054818,19057111-19057191,
19057242-19057265,19057581-19057753,19057847-19058123,
19059093-19059149,19059604-19059699
Length = 447
Score = 71.7 bits (168), Expect = 4e-13
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Frame = +2
Query: 158 LIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGW 337
L+RR +S + + +L+ +LR++T I + K +L N D D A+ L ++ G
Sbjct: 101 LLRRF-SSEVPASEQMNLIKQLRERTSAPIKDVKASLVSCNWDIDVAQKDLRKR----GV 155
Query: 338 AKATKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFK---F 508
A K + RTA +GL+A+ D+ A+VELNCETDFVA+ND FQ ++ + FK
Sbjct: 156 VLAAKKSSRTAAEGLLAIAQDEKRAAVVELNCETDFVARNDVFQYLL--VLVRGFKASSL 213
Query: 509 AHTKLQAKGP 538
A L A+ P
Sbjct: 214 AKLALSARDP 223
>02_05_0033 +
25250312-25250563,25251469-25251540,25251925-25252069,
25253449-25253558,25253665-25254079,25254166-25254413
Length = 413
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 47 KEKPRLCVELMKIQ*NFKIKSVHTR*NYTVTYKMIFQLIRRIHTSPAYKAAESSLLA-KL 223
+ K + +E ++ + KI + R NY +T QLI++ PA KAA +S+LA KL
Sbjct: 158 ERKDQKTLEKLRAERKAKIDELKERTNYYLTQ----QLIQKYDLDPAAKAAAASVLASKL 213
Query: 224 RKKTGYTI 247
++TG +
Sbjct: 214 GEETGLKV 221
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 31.1 bits (67), Expect = 0.68
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = +2
Query: 260 KALEMHNNDADKAETWLHEQAQAMGWAKATKLAGRTALQGLVAVKFDKNHG----ALVEL 427
KAL + E+W+H + + K LA R + G +A D H +LV
Sbjct: 868 KALILEYRANGNLESWIHPKPCSQSPPKLFSLASRVRVAGDIATALDYLHNRCTPSLVHC 927
Query: 428 NCETDFVAKNDKFQKMIEDAAIASF 502
+ + V +D+ I D +A F
Sbjct: 928 DLKPSNVLLDDEMVACISDFGLAKF 952
>07_03_1390 + 26217623-26218370,26218435-26218934
Length = 415
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = -2
Query: 435 SQLSSTRAPWFLSNLTATNPWRAVLPANLV------AFAHPIAW 322
S+ ST A W L NL + P ++LP N+V F HP A+
Sbjct: 335 SKSVSTNADWKLENLWVSQPTPSMLPPNIVYLIARAEFMHPKAY 378
>09_04_0640 -
19166953-19167285,19167631-19168449,19169057-19169163,
19170070-19170154
Length = 447
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 395 FDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFK 505
F+K+ L E CETDF++K D K + +FK
Sbjct: 101 FNKDTLGLDEHVCETDFISKVDHILKRHSGTCVKTFK 137
>08_02_0478 + 17621678-17623768
Length = 696
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 375 WRAVLPANLVAFAHPIAWACSWS-HVSALSASLLCISNAFLQLAI 244
W A+L A + AHP AW + H L+++ + +A A+
Sbjct: 61 WNALLAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAV 105
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 432 QLSSTRAPWFLSNLTATNPWRAVL 361
Q++ PWFLS T PW +VL
Sbjct: 367 QVAWVTGPWFLSIFTNVLPWESVL 390
>03_04_0089 - 17217235-17217461,17218298-17218418
Length = 115
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -2
Query: 396 NLTATNPWRAVLPANLVAFAHPIAWACSWSHVSALSASLLCISNAFLQLAIV*PVFFRSL 217
N TA + RAVLP N V+ A P+A + + + + LC+ + L ++ + +F R
Sbjct: 9 NATAFSLSRAVLPINAVSPAPPVAVQAAATSAVSTNRHTLCLLS--LSISCLPTIFCRRS 66
Query: 216 AS 211
A+
Sbjct: 67 AA 68
>04_04_1555 +
34376612-34376887,34377306-34377450,34377891-34378000,
34378121-34378418,34378591-34379006
Length = 414
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 68 VELMKIQ*NFKIKSVHTR*NYTVTYKMIFQLIRRIHTSPAYKAAESSLLA-KLRKKTGYT 244
+E ++ + KI + R NY T QLI+R PA KAA +++LA KL +G
Sbjct: 149 LENLRAERQAKIDELKERTNYYTTQ----QLIQRYDLDPAAKAAAATVLASKLGADSGLR 204
Query: 245 I 247
+
Sbjct: 205 V 205
>01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538
Length = 336
Score = 27.5 bits (58), Expect = 8.4
Identities = 29/112 (25%), Positives = 44/112 (39%)
Frame = -2
Query: 510 ANLNEAIAASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATNPWRAVLPANLVAFAHP 331
ANL E+ A + F N+S S+ +S A S + P LP N F+
Sbjct: 170 ANLVESSACRATRF-NMSSSLALSLLAVSRANAGLLFSANCSRTPPTGSLPVNCTGFSGG 228
Query: 330 IAWACSWSHVSALSASLLCISNAFLQLAIV*PVFFRSLASSEDSAALYAGLV 175
W S + + + Q ++V + + L S+ D YAGLV
Sbjct: 229 GEWFLSLNRMYDPGGPARAVDTVGCQYSVVPVLPWSELRSARD----YAGLV 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,838,508
Number of Sequences: 37544
Number of extensions: 297362
Number of successful extensions: 775
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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