Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31253
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1104 + 24339463-24340314,24340472-24340786                       28   7.5  
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     27   9.9  
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005...    27   9.9  

>08_02_1104 + 24339463-24340314,24340472-24340786
          Length = 388

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 342 KFGGGAEACCAGLVYWLLAGGDTACM 265
           +F  G  AC  G+ YW+ AG   A M
Sbjct: 206 RFQPGGVACVDGVAYWITAGTPAAIM 231


>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 463 HGYQISSQMNAWFSSYNGTSVKTTVDLYISMETYLK 356
           HGY  S+ +  +FS Y    V TT +  I  +T  K
Sbjct: 631 HGYSFSAMVINYFSDYRNYVVSTTTEANIVEKTTAK 666


>02_04_0597 -
           24198112-24198462,24199249-24199389,24200322-24200537,
           24200626-24201561,24201655-24201816,24202026-24202304,
           24202399-24203171,24206142-24207363
          Length = 1359

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +3

Query: 153 RGVQTMLHVV*KTTILSTANKMLIKPRLSNSNQHNRQSCRLCHHQPAASTQDPHSRLQRL 332
           + VQ +  V+ K+      + + + P+L +S++H+  +C L  H     T +P  RL   
Sbjct: 702 QSVQKIALVLEKSPKKLQPDLVALVPKLVDSSEHSLAACALLDHLQKPDT-EPSLRLPVF 760

Query: 333 HQISQL 350
           + +S+L
Sbjct: 761 NALSEL 766


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,633
Number of Sequences: 37544
Number of extensions: 321236
Number of successful extensions: 870
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)