Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31253
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542286-1|CAG47081.1| 338|Homo sapiens SCAMP1 protein. 57 6e-08
BC034048-1|AAH34048.1| 338|Homo sapiens secretory carrier membr... 57 6e-08
BC015065-1|AAH15065.1| 338|Homo sapiens secretory carrier membr... 57 6e-08
BC009787-1|AAH09787.1| 157|Homo sapiens secretory carrier membr... 57 6e-08
AF005037-1|AAB62722.1| 338|Homo sapiens secretory carrier membr... 57 6e-08
CR456800-1|CAG33081.1| 329|Homo sapiens SCAMP2 protein. 48 3e-05
BC004385-1|AAH04385.1| 329|Homo sapiens secretory carrier membr... 48 3e-05
BC001376-1|AAH01376.1| 329|Homo sapiens secretory carrier membr... 48 3e-05
AF005038-1|AAB62723.2| 329|Homo sapiens secretory carrier membr... 48 3e-05
AF023268-2|AAC51821.1| 347|Homo sapiens propin1 protein. 40 0.006
CR541757-1|CAG46557.1| 347|Homo sapiens SCAMP3 protein. 40 0.010
BC005135-1|AAH05135.1| 347|Homo sapiens secretory carrier membr... 40 0.010
BC000161-1|AAH00161.1| 347|Homo sapiens secretory carrier membr... 40 0.010
AL713999-27|CAI95095.1| 347|Homo sapiens secretory carrier memb... 40 0.010
AF005039-1|AAB62724.1| 347|Homo sapiens secretory carrier membr... 39 0.014
>CR542286-1|CAG47081.1| 338|Homo sapiens SCAMP1 protein.
Length = 338
Score = 56.8 bits (131), Expect = 6e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +2
Query: 74 MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
MS F+ NPF+DP ++NPF DPSV QV T N GL++YNPF
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQV---TRNVPPGLDEYNPF 40
>BC034048-1|AAH34048.1| 338|Homo sapiens secretory carrier membrane
protein 1 protein.
Length = 338
Score = 56.8 bits (131), Expect = 6e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +2
Query: 74 MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
MS F+ NPF+DP ++NPF DPSV QV T N GL++YNPF
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQV---TRNVPPGLDEYNPF 40
>BC015065-1|AAH15065.1| 338|Homo sapiens secretory carrier membrane
protein 1 protein.
Length = 338
Score = 56.8 bits (131), Expect = 6e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +2
Query: 74 MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
MS F+ NPF+DP ++NPF DPSV QV T N GL++YNPF
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQV---TRNVPPGLDEYNPF 40
>BC009787-1|AAH09787.1| 157|Homo sapiens secretory carrier membrane
protein 1 protein.
Length = 157
Score = 56.8 bits (131), Expect = 6e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +2
Query: 74 MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
MS F+ NPF+DP ++NPF DPSV QV T N GL++YNPF
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQV---TRNVPPGLDEYNPF 40
>AF005037-1|AAB62722.1| 338|Homo sapiens secretory carrier membrane
protein protein.
Length = 338
Score = 56.8 bits (131), Expect = 6e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +2
Query: 74 MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
MS F+ NPF+DP ++NPF DPSV QV T N GL++YNPF
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQV---TRNVPPGLDEYNPF 40
>CR456800-1|CAG33081.1| 329|Homo sapiens SCAMP2 protein.
Length = 329
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +2
Query: 74 MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
MS F+ NPF+DP NPF DPSV Q+ TN GL ++NPF
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQL---TNAPQGGLAEFNPF 40
>BC004385-1|AAH04385.1| 329|Homo sapiens secretory carrier membrane
protein 2 protein.
Length = 329
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +2
Query: 74 MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
MS F+ NPF+DP NPF DPSV Q+ TN GL ++NPF
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQL---TNAPQGGLAEFNPF 40
>BC001376-1|AAH01376.1| 329|Homo sapiens secretory carrier membrane
protein 2 protein.
Length = 329
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +2
Query: 74 MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
MS F+ NPF+DP NPF DPSV Q+ TN GL ++NPF
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQL---TNAPQGGLAEFNPF 40
>AF005038-1|AAB62723.2| 329|Homo sapiens secretory carrier membrane
protein protein.
Length = 329
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +2
Query: 74 MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
MS F+ NPF+DP NPF DPSV Q+ TN GL ++NPF
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQL---TNAPQGGLAEFNPF 40
>AF023268-2|AAC51821.1| 347|Homo sapiens propin1 protein.
Length = 347
Score = 40.3 bits (90), Expect = 0.006
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 68 LKMSKFEDNPFSDPT-IDNPFADPSVQQVARSTNNATRGLEDYNPFD 205
+ S+ NPF++P+ +DNPF DP+V Q S ATR + YNPF+
Sbjct: 1 MAQSRDGGNPFAEPSELDNPFQDPAVIQHRPSRQYATRDV--YNPFE 45
>CR541757-1|CAG46557.1| 347|Homo sapiens SCAMP3 protein.
Length = 347
Score = 39.5 bits (88), Expect = 0.010
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 68 LKMSKFEDNPFSDPT-IDNPFADPSVQQVARSTNNATRGLEDYNPFD 205
+ S+ NPF++P+ +DNPF DP+V Q S AT L+ YNPF+
Sbjct: 1 MAQSRDGGNPFAEPSELDNPFQDPAVIQHRPSRQYAT--LDVYNPFE 45
>BC005135-1|AAH05135.1| 347|Homo sapiens secretory carrier membrane
protein 3 protein.
Length = 347
Score = 39.5 bits (88), Expect = 0.010
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 68 LKMSKFEDNPFSDPT-IDNPFADPSVQQVARSTNNATRGLEDYNPFD 205
+ S+ NPF++P+ +DNPF DP+V Q S AT L+ YNPF+
Sbjct: 1 MAQSRDGGNPFAEPSELDNPFQDPAVIQHRPSRQYAT--LDVYNPFE 45
>BC000161-1|AAH00161.1| 347|Homo sapiens secretory carrier membrane
protein 3 protein.
Length = 347
Score = 39.5 bits (88), Expect = 0.010
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 68 LKMSKFEDNPFSDPT-IDNPFADPSVQQVARSTNNATRGLEDYNPFD 205
+ S+ NPF++P+ +DNPF DP+V Q S AT L+ YNPF+
Sbjct: 1 MAQSRDGGNPFAEPSELDNPFQDPAVIQHRPSRQYAT--LDVYNPFE 45
>AL713999-27|CAI95095.1| 347|Homo sapiens secretory carrier
membrane protein 3 protein.
Length = 347
Score = 39.5 bits (88), Expect = 0.010
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 68 LKMSKFEDNPFSDPT-IDNPFADPSVQQVARSTNNATRGLEDYNPFD 205
+ S+ NPF++P+ +DNPF DP+V Q S AT L+ YNPF+
Sbjct: 1 MAQSRDGGNPFAEPSELDNPFQDPAVIQHRPSRQYAT--LDVYNPFE 45
>AF005039-1|AAB62724.1| 347|Homo sapiens secretory carrier membrane
protein protein.
Length = 347
Score = 39.1 bits (87), Expect = 0.014
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +2
Query: 92 NPFSDPT-IDNPFADPSVQQVARSTNNATRGLEDYNPFD 205
NPF++P+ +DNPF DP+V Q S AT L+ YNPF+
Sbjct: 9 NPFAEPSELDNPFQDPAVIQHRPSRQYAT--LDVYNPFE 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,879,051
Number of Sequences: 237096
Number of extensions: 1786320
Number of successful extensions: 3592
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3582
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -