Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31253
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    32   0.31 
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    32   0.31 
AC006651-11|AAM48540.1|  428|Caenorhabditis elegans Hypothetical...    28   5.0  
AC006651-10|AAF39866.2|  456|Caenorhabditis elegans Hypothetical...    28   5.0  
Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
           DNPF+DP    P    +    ++ T+  T   ED+NPF
Sbjct: 3   DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPF 40


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 202
           DNPF+DP    P    +    ++ T+  T   ED+NPF
Sbjct: 3   DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPF 40


>AC006651-11|AAM48540.1|  428|Caenorhabditis elegans Hypothetical
           protein H06I04.1b protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 281 PPASSQYTRPAQQASAPPPNFTTADFQVCLHTN 379
           PP SS   +P   +  PPPN  T        TN
Sbjct: 12  PPGSSSSAKPVTSSKKPPPNDVTTTTNTTKTTN 44


>AC006651-10|AAF39866.2|  456|Caenorhabditis elegans Hypothetical
           protein H06I04.1a protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 281 PPASSQYTRPAQQASAPPPNFTTADFQVCLHTN 379
           PP SS   +P   +  PPPN  T        TN
Sbjct: 12  PPGSSSSAKPVTSSKKPPPNDVTTTTNTTKTTN 44


>Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical
           protein C27A7.2 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 198 LSTANKMLIKPRLSNSNQHNRQSCRL 275
           L  A K+++KP L NS    R  CR+
Sbjct: 273 LVKAGKVIVKPELHNSKTQQRGKCRI 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,254,114
Number of Sequences: 27780
Number of extensions: 284958
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)