Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31247
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   2.0  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    26   3.5  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    25   6.2  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   8.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 48  KKYKLVPPDGGWGYL-ICVSAIVNIVSSFK**HF*YIPFLGNKGCIWSKQTY 200
           K Y   P    W Y  +C + +++  ++ K   F  +  + N G IW ++ Y
Sbjct: 33  KLYVAYPDPNKWNYTGLCGALVLSYDTTAKCCWFKLVDVVNNSGIIWDQELY 84


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 473 ERRTEIVRPVNELPHLRHKVK 535
           +RRT  V P N LPHL+H VK
Sbjct: 3   KRRTAAVLP-NNLPHLQHLVK 22


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 342 NRWASKGSARRDGIC*QLPERLRR 271
           N +++KG+A+ DGI   LPE++ R
Sbjct: 242 NEYSTKGAAQVDGIRYLLPEQIHR 265


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 526 VSQVWQFIHWSYDFCSTFSCV 464
           V+++W F    Y  C+ F+C+
Sbjct: 107 VTEIWLFCRLGYPLCALFNCL 127


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 363 RPFQFHQNRWASKGSARRDGIC*QLPERLRRKPNNSRAVASRINLLPDRN 214
           RP + ++   A +GS  R G+C ++     +KPN++    +R+ L   R+
Sbjct: 34  RPEKTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVRLSTGRS 83


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = -3

Query: 233 IYYRIEIATERIRLFGPNATLVS*EGNILEVLLFKGTHNINYRGDTNQVAPSSVRRYQFI 54
           I Y  EI T  + +  PNA+    E  + +++ F+     +   DT+    S++  Y F+
Sbjct: 762 ITYYEEIKTGMVDVLDPNASFEKSEIQVGDIICFEKKLVHDSSSDTSHPYKSALDLYDFM 821

Query: 53  FFSCHRFIV 27
               HR ++
Sbjct: 822 ---AHRVVI 827


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 98  TNQVAPSSVRRYQFIFFSCHRFIVFTGDNPL 6
           T+ +   + +  Q +  S HR ++ TGDNPL
Sbjct: 683 TSPLKEDARQTVQMLNNSSHRCMMITGDNPL 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,358
Number of Sequences: 5004
Number of extensions: 50054
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)