Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31247
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0187 + 12436934-12437108,12438020-12439044                       31   0.51 
12_01_0113 - 864380-865027,865419-866408,867128-867194,868377-86...    29   3.6  
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139...    28   6.3  
05_01_0032 + 217055-218074                                             27   8.3  

>04_03_0187 + 12436934-12437108,12438020-12439044
          Length = 399

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 141 HF*YIPFLGNKGCIWSKQTYSLCRDFDPVVD*FAKQL--LLSC*VSFGGARAAVSKSH 308
           H   +P  GN G +       LCRD  PVV+ F +Q   L S  +SF G R   S  H
Sbjct: 32  HINIVPSFGNMGALG----IDLCRDLHPVVNGFLQQASWLQSAPISFQGFRPQESWMH 85


>12_01_0113 -
           864380-865027,865419-866408,867128-867194,868377-868468
          Length = 598

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 314 GGMGFANSCPSASEGNLTTQEQLLRELIYYRIEIATERIRL 192
           GG G A+SC S    N     +  REL   ++EIA  R+RL
Sbjct: 466 GGSGVASSCVSPQRDNYACLRRENREL---KLEIARMRVRL 503


>01_06_1745 -
           39609894-39610030,39610127-39610223,39613856-39613996,
           39614094-39614272,39615067-39615111,39615802-39615858,
           39615935-39616163,39616348-39616418,39619527-39619635
          Length = 354

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 461 KNTRERRTEIVRPVNELPHLRHKVKASI 544
           KNT+E    +V P+   PH   K++A I
Sbjct: 277 KNTKEENEPVVTPLKTFPHEMAKIEAPI 304


>05_01_0032 + 217055-218074
          Length = 339

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 124 LTILTIAETQIK*PHPPSGGTSLYFLVVIDLSFSLVT 14
           L +LTI+ T +  P P   G     L ++DLSF+ +T
Sbjct: 126 LRVLTISHTAVSGPIPSFIGDKFTDLGILDLSFNSLT 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,138,942
Number of Sequences: 37544
Number of extensions: 324226
Number of successful extensions: 745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)