Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31246
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   0.63 
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   1.9  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   2.5  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   3.4  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    24   7.8  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    24   7.8  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    24   7.8  

>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 103 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAA 237
           +S T+ NVA +G GN+GG +   +  KGF          + N  A
Sbjct: 3   ASRTNVNVAIVGTGNIGGELLNQI--KGFNENASTNGTTSFNVVA 45


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 92  DGRIVLTPTRMWLSSASETWEDSWLRTWLK 181
           +G+I+L   ++WL       E  W   WL+
Sbjct: 105 NGKILLIRPKIWLCDDGNFRESRWFTPWLR 134


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 301 KRPRRLHQRLQQWSWLASLRSWPL 230
           K+ +  H+R++  +WL+SL SW L
Sbjct: 186 KQTQETHERIR--NWLSSLNSWQL 207


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 143 ETWEDSWLRTWLKRV 187
           +TW D+ LRTWL  V
Sbjct: 188 DTWSDNELRTWLHDV 202


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 89  PDGRIVLTPTRMWLSSASETWE 154
           PDG +V  P+  +L  A + WE
Sbjct: 643 PDGVVVFFPSFAFLQQAVKVWE 664


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 280 QRLQQWSWLASLRSWPLRSVH 218
           Q   Q  +LAS++ WP+ S+H
Sbjct: 510 QAYAQRLFLASIKRWPVTSLH 530


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 163 AANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSI 267
           A  L+ +GF +  +D      +AA +N +   NS+
Sbjct: 338 AGTLISRGFVINKHDSLDSIPDAALENLIIQKNSL 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.130    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,610
Number of Sequences: 5004
Number of extensions: 28283
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)