Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31246
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 42 2e-04
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 34 0.035
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 31 0.33
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 29 0.76
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 1.8
11_06_0743 + 26847652-26849424 28 2.3
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 28 2.3
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 27 4.0
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782... 27 5.3
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846... 26 7.1
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203... 26 7.1
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809... 26 7.1
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854 26 7.1
05_02_0094 + 6562212-6563399 26 7.1
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 26 7.1
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 26 7.1
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966... 26 9.3
07_01_1086 - 9930311-9931993 26 9.3
04_03_0316 + 14261942-14262506,14262710-14263134 26 9.3
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 26 9.3
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Frame = +1
Query: 64 STQCLYTAARRA----YSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDAL 225
++Q +Y A++ A + T K + F+GLG MG MA++L+K GF+V YD K L
Sbjct: 302 ASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTL 359
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.9 bits (74), Expect = 0.035
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 124 VAFLGLGNMGGFMAANLVKKGFTV 195
V FLGLG MG MAANL++ GF V
Sbjct: 3 VGFLGLGIMGKAMAANLLRHGFRV 26
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 30.7 bits (66), Expect = 0.33
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +1
Query: 49 ARTILSTQCLYTAARRAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKD--- 219
AR + S C +++ + V FLGLG MG MA+NL+ G V ++ ++
Sbjct: 30 ARLVFS--CSASSSSPSGEGGFSGKVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCD 87
Query: 220 -ALNAAAKNGVTPAN 261
L+ AK +PA+
Sbjct: 88 PLLSLGAKYEPSPAD 102
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 29.5 bits (63), Expect = 0.76
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 160 MAANLVKKGFTVRGYDPSKDALN 228
+A L+K+G RGYD SKD+ N
Sbjct: 251 VARRLLKQGLPFRGYDESKDSYN 273
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 124 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 252
+A +G GN G F+A ++G T+ + S D + AA G +
Sbjct: 704 IAIVGFGNFGQFLARTFARQGHTLLAHSRS-DYSSLAASVGAS 745
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 325 RLYCWSIWKRPRRLHQRLQQWSWLAS-LRSWPLRS 224
R + W+ KR RL +RL+Q W+A+ +R + RS
Sbjct: 94 RRWSWTRGKRTPRLPERLKQRLWMANKIREFSTRS 128
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 340 GTRRARLYCWSIWKRPRRLHQRLQQWSWL 254
G A L WS W R R +H R Q W WL
Sbjct: 79 GRMCATLPWWSTW-RGRWIHLRDQPWLWL 106
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 113 PTRMWLSSASETWEDSWLRTWL 178
P R W AS ED+W R W+
Sbjct: 370 PLRRWWRRASYFLEDNWRRVWV 391
>06_03_0501 +
21476715-21476785,21477045-21477786,21478097-21478246,
21478350-21478589,21479968-21480048,21480144-21480185,
21480953-21481033,21481271-21481368,21482574-21482667,
21482733-21482861,21483881-21483931,21484023-21484049,
21484280-21484387,21484956-21485201
Length = 719
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 55 TILSTQCLYTAARRAYSSNTDKNVAFLGLGNMG 153
TI + Q + R + NT+ + LG GNMG
Sbjct: 571 TITAFQVSFVCGTRHHVMNTEHTIISLGSGNMG 603
>10_05_0038 -
8458901-8459207,8459367-8459705,8459710-8459913,
8460374-8460492
Length = 322
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 337 TRRARLYCWSIWKRPRRLHQRLQQWSWLASLRSWPLRSVHL-WK 209
T L C ++ + PRRL R + WS + ++P+ ++ + W+
Sbjct: 152 TCEVSLPCATMVRMPRRLRWRSEPWSHMWPRMTFPIATLEIRWR 195
>09_01_0136 -
2030523-2031062,2032349-2032534,2032642-2032796,
2032917-2033079
Length = 347
Score = 26.2 bits (55), Expect = 7.1
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 9/36 (25%)
Frame = +1
Query: 151 GGFMAANLVK----KGFTVRG-----YDPSKDALNA 231
GGF+A+ LVK KG+TVRG DP D L A
Sbjct: 29 GGFIASWLVKRLLEKGYTVRGTVRNPMDPKNDHLRA 64
>05_03_0074 +
8095355-8096575,8096664-8096901,8096990-8097667,
8097787-8097974
Length = 774
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 82 TAARRAYSSNT-DKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALN 228
T+ R +++SN+ + V +L L+++G RG+D SKD+ N
Sbjct: 232 TSIRESFASNSVEFKVQYLARLTWSLKCIRYLLRQGLAFRGHDESKDSNN 281
>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
Length = 751
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 82 TAARRAYSSNTDK-NVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALN 228
T+ R +++SN+ + V +L L+++G RG+D SKD+ N
Sbjct: 232 TSIRESFASNSAEFKVQYLARLTWSLKCIRYLLRQGLAFRGHDESKDSNN 281
>05_02_0094 + 6562212-6563399
Length = 395
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 130 FLGLGNMGGFMAANLVKKGFTVRGYDPSKDAL 225
F G+ + GGF A V +G+ PSKD +
Sbjct: 304 FDGICDAGGFSEARRVFNEMVFKGFAPSKDGV 335
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 195 SRLRSFQRCTERSGQERSDASQL 263
SRLR QRC E ER++A +L
Sbjct: 764 SRLRPDQRCLENGEYERANAEKL 786
>01_01_0025 +
188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 307 IWKRPRRLHQRLQQWSWLASLR-SWPLRSVHLWKDR 203
+W RP + HQ + Q S SLR P WK R
Sbjct: 1 MWVRPVKAHQHMSQRSVSESLRLHLPAAKQSKWKQR 36
>08_01_0963 -
9661699-9661760,9662095-9662818,9662860-9663265,
9663488-9665037
Length = 913
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 339 VHVEHDFIAGQYGNDHVDSINGCSNGVGW 253
+ HD +A + G +H+ + S VGW
Sbjct: 269 ITTRHDTVAREIGVEHMHQVEFMSAAVGW 297
>07_01_1086 - 9930311-9931993
Length = 560
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 137 ASETWEDSWLRTWLKRVSQFAATILPKMH*TQRPRTE*RQPTPLLQPLMESTWSF 301
+++ ++D R W + + A + QR + E ++P LLQPL W +
Sbjct: 145 STKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPASLLQPLKIPEWKW 199
>04_03_0316 + 14261942-14262506,14262710-14263134
Length = 329
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 298 RPRRLHQRLQQWSWLASLRSWPLRSVHLWKDRSREL 191
RPR LH R+++ + +WP + LW R L
Sbjct: 133 RPRGLHVRVRRRRGIIGCSAWP--GIRLWAREQRGL 166
>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 137 ASETWEDSWLRTWLKRVSQFAATILPKMH*TQRPRTE*RQPTPLLQPLMESTWSF 301
+++ ++D R W + + A + QR + E ++P LLQPL W +
Sbjct: 1024 STKMYQDLKERFWCASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW 1078
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.130 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,654,920
Number of Sequences: 37544
Number of extensions: 223311
Number of successful extensions: 642
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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