Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31244
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    27   1.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.0  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   3.5  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.6  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    25   6.1  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 330 VDVYGLRQPLNTXWAVSSSTHLCNKKGVTLKKKS 431
           +DV+  R P N  W+ S + ++    GV   K++
Sbjct: 74  IDVHNERDPANIKWSASGAEYVIESTGVFTTKET 107


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 262 YCFTVEIDRVVVPTRADSQEIFTKYQFTCTYVYYNQQKCCMQEFRESVKSTLVY 101
           YC T+  D  V+ T      + TKY+ T +   Y   K  +  ++E  KSTL +
Sbjct: 333 YC-TIFCDEEVLKTPGLLAYLITKYRCTYSLFDYAGLKQTVYNYQEDPKSTLSF 385


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 481 NGVSKPQFQG*RKIYKXDFFFKVTPFLLHRWVDELTAHXVLS 356
           N  ++P F     +Y  D+F  + P  LH ++    A+ +LS
Sbjct: 218 NSAARPPFSH-HIVYSDDWFQSIVPVQLHNFLGSDGAYGILS 258


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 161 QPTKMLYARVSRICKEYVSLSLSKKKGLRTAVPEHHI 51
           QP  + Y+   +  +E ++L  SK   LRTA P  ++
Sbjct: 425 QPANLDYSSAIQRAQERLTLEESKLTDLRTAEPSQYV 461


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 289 CLALQTETHYCFTVEIDRVVVPTRADSQEIFTKYQF 182
           C+ + T  H     E  R+ +  +  SQE+FTKY F
Sbjct: 115 CIGMYTSPHLRSVCE--RIQLNGKPISQELFTKYFF 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,276
Number of Sequences: 5004
Number of extensions: 43980
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)