Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31244
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425           30   0.86 
07_01_0153 - 1092242-1092285,1092710-1092865,1093004-1093754           30   1.1  
07_03_1797 - 29624908-29624932,29625551-29625641,29625753-296258...    29   1.5  
04_01_0288 + 3824337-3826385                                           27   8.0  
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814           27   8.0  

>07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425
          Length = 370

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 297 TTAASPFKPKRITASR*K*TGWWYLPVRTHKRYLLNINSPVPMFI 163
           T A+SPF P  I +       WW L  R H R L+N+ +P+ + +
Sbjct: 83  TAASSPFSPPAIGSPH----WWWALDCR-HGRVLINLFNPMELMV 122


>07_01_0153 - 1092242-1092285,1092710-1092865,1093004-1093754
          Length = 316

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 303 IVTTAASPFKPKRITASR*K*TGWWYLPVRTHKRYLLNINSPVPMFI 163
           + TTAASPF P  I         WW L  R H R L ++ +P+ + +
Sbjct: 79  VPTTAASPFSPPAIDPP----NWWWALDCR-HGRVLSHLFNPMELMV 120


>07_03_1797 -
           29624908-29624932,29625551-29625641,29625753-29625891,
           29626256-29626346,29626481-29626522,29626644-29626696
          Length = 146

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 286 LALQTETHYCFTVEIDRVVVPTRADSQEIFTKYQFTCT-YVYYNQQKCCMQEFRESVKS 113
           + +Q   H C+   +D V+V  ++ ++E   K Q +C  Y+Y  Q + C    R S +S
Sbjct: 32  IEIQPRCHCCYVEFVDVVMVEDKSRAKE-HIKLQESCVGYIYSLQSQVCPVGCRASTQS 89


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 418 KVTPFLLHRWVDELTAHXVLSGCRSP*TSTT*MRH 314
           ++ P L H+W+ E+T   ++  CR+    T  ++H
Sbjct: 537 EMLPGLPHKWLYEMTKKNIIESCRASNGFTNEVKH 571


>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
          Length = 582

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 418 KVTPFLLHRWVDELTAHXVLSGCRSP*TSTT*MRH 314
           ++ P L H+W+ E+T   ++  CR+    T  ++H
Sbjct: 437 EMLPGLPHKWLYEMTKKNIIESCRASNGFTNEVKH 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,303,558
Number of Sequences: 37544
Number of extensions: 315657
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)