Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31244
         (486 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    28   5.9  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    28   5.9  
AY095181-1|AAM12274.1|  320|Drosophila melanogaster GM07634p pro...    28   5.9  

>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = -2

Query: 257  LHGRNRQGGGTYPCGLTRDIY*ISIHLYLCLLQPTKMLYARVSRICKEYVSLSLSKKKGL 78
            LH    QGG T   G+T+ +  +  H Y   +      Y R  + C++  +   +K    
Sbjct: 900  LHDDPIQGGHT---GITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMT 956

Query: 77   RTAVPEHHIARIIPKTL 27
             T  PEH   R++  T+
Sbjct: 957  ITETPEHAFDRVVVDTI 973


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = -2

Query: 257 LHGRNRQGGGTYPCGLTRDIY*ISIHLYLCLLQPTKMLYARVSRICKEYVSLSLSKKKGL 78
           LH    QGG T   G+T+ +  +  H Y   +      Y R  + C++  +   +K    
Sbjct: 663 LHDDPIQGGHT---GITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMT 719

Query: 77  RTAVPEHHIARIIPKTL 27
            T  PEH   R++  T+
Sbjct: 720 ITETPEHAFDRVVVDTI 736


>AY095181-1|AAM12274.1|  320|Drosophila melanogaster GM07634p
           protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = -2

Query: 257 LHGRNRQGGGTYPCGLTRDIY*ISIHLYLCLLQPTKMLYARVSRICKEYVSLSLSKKKGL 78
           LH    QGG T   G+T+ +  +  H Y   +      Y R  + C++  +   +K    
Sbjct: 51  LHDDPIQGGHT---GITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMT 107

Query: 77  RTAVPEHHIARIIPKTL 27
            T  PEH   R++  T+
Sbjct: 108 ITETPEHAFDRVVVDTI 124


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,969,774
Number of Sequences: 53049
Number of extensions: 527950
Number of successful extensions: 955
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1705394754
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)