Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31244
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AL031635-10|CAA21037.2|  492|Caenorhabditis elegans Hypothetical...    28   4.1  
Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   9.5  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   9.5  

>Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical
           protein K08F4.5 protein.
          Length = 215

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 327 VVDVYGLRQPLNTXWAVSSSTHLCNKKGVTLKKK 428
           + +++GL Q L   + +  + HLC KKG   KKK
Sbjct: 4   LAEIHGLAQLLVLVFTLVVTAHLCGKKGAKNKKK 37


>Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical
           protein C40C9.2 protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 80  NLFFYLVID*RTLYRFAKLLHTTFLLVVINI 172
           +LFFYL+I  RTLY    L+  +FL+ ++ +
Sbjct: 231 SLFFYLIIQRRTLYYGLNLIIPSFLISLMTV 261


>Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = -1

Query: 393 DGWTSSQPTWC*VVAGAHRHLQRKCA-----THLSIVTTAASPFKPKRI 262
           DGW  ++  W  V   A   +Q+K A      H S+ T   + FK K I
Sbjct: 255 DGWAKNETWWMDVTRIAEDEIQKKAAQNRGDVHASVQTEVQNMFKNKSI 303


>Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = -1

Query: 393 DGWTSSQPTWC*VVAGAHRHLQRKCA-----THLSIVTTAASPFKPKRI 262
           DGW  ++  W  V   A   +Q+K A      H S+ T   + FK K I
Sbjct: 255 DGWAKNETWWMDVTRIAEDEIQKKAAQNRGDVHASVQTEVQNMFKNKSI 303


>AL031635-10|CAA21037.2|  492|Caenorhabditis elegans Hypothetical
           protein Y47D3B.4 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 298 YNGCLALQTETH-YCFTVEIDRVVVPTRADS 209
           YN C      TH Y   ++ID V+VP + D+
Sbjct: 317 YNDCFYNYIHTHRYVLIIDIDEVIVPIQFDN 347


>Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 333 LQRKCATHLSIVTTAASPFKPKRITASR*K*TGWWYLP 220
           +Q+K   H +I++T +  F+   + A   K T  W++P
Sbjct: 315 MQKKKVEHSTIISTLSQRFRNPGLEAEYHKETDHWFIP 352


>Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 333 LQRKCATHLSIVTTAASPFKPKRITASR*K*TGWWYLP 220
           +Q+K   H +I++T +  F+   + A   K T  W++P
Sbjct: 315 MQKKKVEHSTIISTLSQRFRNPGLEAEYHKETDHWFIP 352


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 269 NALLLHGRNRQGGGTYPCG 213
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 269 NALLLHGRNRQGGGTYPCG 213
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,136,539
Number of Sequences: 27780
Number of extensions: 262200
Number of successful extensions: 475
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)