Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31243
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 29 0.34
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 28 1.0
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 27 2.4
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 3.2
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 25 7.3
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 25 7.3
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 25 7.3
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.6
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 9.6
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 9.6
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 9.6
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 29.5 bits (63), Expect = 0.34
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 78 LNATAIGTYLCAKNVLIAHAKAYHLYNNEFKDKQGGQCGITISANSF 218
LN A GT L A N++ A YH Y N +++ G + N F
Sbjct: 178 LNMIAPGTLLVADNIITPGAPEYHKYVNMSPEERRGYQAKVRNVNGF 224
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 1.0
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +3
Query: 15 TINEPREICYEGYGSVHKAP--ILNATAIGTYLCAKNVLIA--HAKAYHLYNNEFK 170
TI+EP +I G+GS + P ++N G ++ NVL+A + + ++NNE K
Sbjct: 118 TISEPEQIPCPGFGSDNIVPLSLVNDFKDGAFV---NVLVAIQWKEEFEIFNNETK 170
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 2.4
Identities = 24/76 (31%), Positives = 34/76 (44%)
Frame = +3
Query: 114 KNVLIAHAKAYHLYNNEFKDKQGGQCGITISANSFRPFTDSEEDHAATELRRQAEFGLYA 293
+N+LI A Y NN G G T+SA+ F + + +H + E+G
Sbjct: 222 RNILITSALPY--VNNV--PHLGNIVGSTLSADVFARYHRAR-NHNTLYICGTDEYGTAT 276
Query: 294 EPIFSEEGGFPKELVE 341
E EEG PKEL +
Sbjct: 277 ETKALEEGVSPKELCD 292
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 510 IVGAIRNLLVGRHQEAGVMVDPKEVRSSSDQFSFF 406
++GA + +LVG HQ+ G +V K+V +S S F
Sbjct: 579 VLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLF 613
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 537 PTVMSGSIGIVGAIRNLLV 481
P VMSG IG+ G + ++L+
Sbjct: 57 PVVMSGIIGVYGLVMSVLI 75
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 264 RRQAEFGLYAEPIFSEEGG 320
RR FG YA+P S +GG
Sbjct: 17 RRDHPFGFYAKPCKSSDGG 35
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 352 KKVQKEGYPWSRIPEFTDEERELVRGASDFFGVNHYTGFLVSANEQISDRPYYT 513
K + E + + PEF D R ++T F V S RP+YT
Sbjct: 428 KVPEDEEFHYCEDPEFDDFSTPEERALGQIVREKYHTDFYVIDKYPSSVRPFYT 481
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 445 GVNHYTGFLVSANEQISDRPY 507
G+N+YTGFL + + I+D P+
Sbjct: 246 GINNYTGFL--SKKHINDFPF 264
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 171 DKQGGQCGITISANSFRPFTDSEED 245
DK CG+T+ A TD E+D
Sbjct: 825 DKPEDHCGMTVFAAQMNEITDLEKD 849
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 18 INEPREICYEGYGSVHKAPILNATAIGT 101
++E +E +G S+ +AP+L+ A+GT
Sbjct: 196 VHEFQEFFGDGITSLTQAPVLDVLAVGT 223
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 312 EGGFPKELVEIVAEKSAKRRLPVVQNSG 395
+ G P+ LVE++ SA+ + P +++ G
Sbjct: 288 DAGIPRRLVELLMHPSAQVQTPALRSVG 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,494
Number of Sequences: 5004
Number of extensions: 46174
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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