Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31242
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    30   0.38 
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.5  

>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 163 ISKKKITSQRRKTGRIATRLTLRLFVSTILTCYFQFQIYFHT*IETF 23
           +S+ +   +RRK  R         F++++L+C   F+ Y HT  E F
Sbjct: 51  VSEIEAKKRRRKKHRYIYLAVCLFFLASVLSCAIIFRFYLHTNRENF 97



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -3

Query: 203 SDYSEKNSHKKSFYFKKKNYITT*KNRQNRHKAYTKAFCKYNLNVLFSISDLFSY 39
           S Y E NS  ++    K + I   K R+ +H+    A C + L  + S + +F +
Sbjct: 34  SSYEESNSPIENTEVLKVSEIEAKKRRRKKHRYIYLAVCLFFLASVLSCAIIFRF 88


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 308 RYYFYRNLPVGNLSLKQRSNQTN*LPRNV*TFCV 207
           R+ F+ NLP G LSL       N +P+   +FCV
Sbjct: 244 RWIFFINLPTGGLSLALLIFFLNLVPKPTVSFCV 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,870
Number of Sequences: 5004
Number of extensions: 51249
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)