Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31240
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   3.6  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    25   8.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.4  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   8.4  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    25   8.4  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 301 WPAPSKASTIPLPRELWLREGIG 233
           WP+ SK  T+ + R LW+ E  G
Sbjct: 92  WPSASKNDTLRVVRGLWMYEDTG 114


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 653 PVDHHHTAAVQQRPNPHGLLGQADKY 730
           PV  +H+AA+   P P GL     KY
Sbjct: 246 PVGLNHSAALMTGPKPEGLTSVGVKY 271


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
 Frame = +1

Query: 463 SRXCPSRYQ----RCSRRSS 510
           SR CPS+YQ    RC+R SS
Sbjct: 410 SRSCPSKYQCYSCRCARNSS 429


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 466 VILAAKVLINAIPASAFLWSFMSIISLTDAVALTSIIFRPLVDSLGGNG 320
           V+L   +L+N +P   + W F + + L     + +II+ P+  S   +G
Sbjct: 216 VLLVFTILLNQVPPRYYKWIFKASMLLMFIDYVMNIIWVPVATSKKPDG 264


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 460 ISRXCPSRYQRCSRRSSAGNTNAVVTESFFNDAEA 564
           I+R C    ++ +  +   NT  V TE+F N  EA
Sbjct: 263 IARACKDTLEKYALSAILSNTRGVCTEAFENVVEA 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,825
Number of Sequences: 5004
Number of extensions: 58629
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)